Protein Info for GFF4556 in Sphingobium sp. HT1-2

Annotation: Bactoprenol glucosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 235 to 258 (24 residues), see Phobius details amino acids 268 to 293 (26 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 5 to 172 (168 residues), 101.3 bits, see alignment E=3e-33

Best Hits

Swiss-Prot: 51% identical to Y501_SYNY3: Uncharacterized glycosyltransferase sll0501 (sll0501) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 49% identity to ppw:PputW619_0863)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>GFF4556 Bactoprenol glucosyl transferase (Sphingobium sp. HT1-2)
MRTVSIVIPVFNEQDSLSLFLDAARPALADALALIGPGAQAEYLFVDDGSTDRTADVLAI
LSRLNSDVRCITLSRNFGKEAALAAGIDHARGDAVIPIDVDLQDPPAVIVEMVRHWLAGA
QVVNARRVDRSTDSWFKRWSARSFYRLLNRLSDYPIPENVGDFRLLDRQAVDVVKQLGEQ
ARFNKGLFSWIGFRVATVDYSRARREAGATKWRLGKLWSLAVDGITASTTMPLRIWSYIG
GGIALLAFAYAAFLVVHTLVTGVDTPGYASIMVAVLGLGGLNLMSLGIIGEYLGRVASEV
RQRPLYVIADEQGGTPLVTPPEACEGEVRWIDQPMRA