Protein Info for GFF4555 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 80 to 108 (29 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 173 to 198 (26 residues), see Phobius details amino acids 213 to 236 (24 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 315 to 332 (18 residues), see Phobius details amino acids 338 to 362 (25 residues), see Phobius details amino acids 465 to 483 (19 residues), see Phobius details PF10131: PTPS_related" amino acids 73 to 234 (162 residues), 28.4 bits, see alignment E=3e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>GFF4555 hypothetical protein (Sphingobium sp. HT1-2)
MRFASGLLRHPMTPLAALGILLMLPSFLFGPGANHSYLYNYMWTGHFGEQMAAGQLYERW
LPNSFEGLGSPTFYFYPPLAYWLSGGLAAIGLPVLQAINVAALLLLIASGMAMHRWLASR
GTHPLLGAALYMLAPYHLHDFYVRGALAEFASFIWLPLIALGIARLPSRSGIALLALSYG
VLILTHLPVATLTGPFLIAPLMLHRIWQDRSTLVPGLIAGILAFTLAAFYLLPAATLQAH
MSTALLWTGKYHAANWSIWREDLLLFPCIALGLGLLAWPARSIWSGIAIVTALASINLIP
FLWQIDLLDKTQFPWRALGIVEFTTITALMTYRPRPVLLAGAGVLLLFPYLVSGIITCAN
LRLPIDYARLDRTVPDAPEYLPAGFDIARVDRYDRSTDLRPWRALPRGDRIVITRPGPVT
IGHAAFPIWQVTHNGQPVPSHGPLISFDARPGIYRIERVRLWQESVGTAISLAAALMLAL
LLWRRRISHLSKFPAYSPSPAMVNRPILGWLARSQNTGGEL