Protein Info for GFF452 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1710 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF03797: Autotransporter" amino acids 1441 to 1689 (249 residues), 163.8 bits, see alignment E=3.4e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1710 amino acids)

>GFF452 hypothetical protein (Xanthobacter sp. DMC5)
MSRLFATSLLASTSLLALALAGPVAHAGDYVIPSGTVVAAPVVVSTSTPGAPFGSVINQG
GIVYTETAKKSSFALTVDAPALTNGILNAGTISVTQSLTKLSVAAGSTQPSTSAETKGIL
IYPAPSPTPLSGSIENSGSIQASRIINAAPVIGSGDVAVNEYAQGIHVATYFAGGIVNTN
SGVLDISNDVTAVYSPVAGNSSMTLTTNVSAIGVLSVSSAAANSIDNAGTISVRARGAIT
EKLVTSSAAWMLAAATARAIGVQMSQLGASMPPGVSGATLANSGIIDVVASITHTTNFTV
ATTLNIPPARLIESSAVVFASGISTTEAQITSFQNTGTISVGGSALSVSNASVSAYNTAA
LLNYNDPKSPKTNPEMGSVGGSVTAYGVSFANGSLGDLTNSGSIDVTGVADTTASASASA
LDKTRVAQQNFAAVTLTGINVAADTLTGPIVNSGAVNLSATASLQSQSTASSNGTPTMKK
AEVAASGYLYTHLAGISVVASGYAASDYSATVRNSGVIKLTSKATGSQSGLALSEREAEA
TVTYSAGANFLSGALLFATNSAAGVYISAPNVAEVTNSGIIDVSSTYASNLSATAGGDGK
AATATATSGPSSFNSFGLNITEVAGGPSTGTVATTGIINSGTIALSSAVALTNVTAANAS
LSDGAAVASALSQSTALSNLPGLDGAIAASYGVYARLDGLAGNLTNSGVISVDQALTITT
VGSAAGASAQATSVADGLSVAMGILALPGAVTGSLVNSGDITAIASGTFGAVASATAASG
KAEADADATGIVLASGIIASADGMTGFSNTADILTKASAKTTVSAASSGSGEVKTSAHGV
GSAMSLGVMLSGPAKISGGFTNTGTIGATALSSVTASGSGGTVSTDATAVSSAFGLLTGA
GAGIGGDLVNTGTIGAVANASATASGGTADASAFAYGLALNATGGIGGSIVNSGTVMAIA
GADATGASRSAKATAVGLQLASGTVGGALANTGTIAAQASGTDATAIGIAIGSTIDGKAL
GAAEVTTLETLKVDTAPAVAGAVTLTDGLVNTGTIAATTGASGNATAIKVAGGSSIGTLT
NRGSIIAAEGNTAGIAIDLTGEGSATRVLLQDGAVYGDLALSSTYADAITWSGGTLSGDV
LGGGLGSLTVLAGVDTSFAYSGTLESLANVSIGGDGTPVSLAFTGTAVGIGTFAVKDQGT
LILTSDSAIETKSYTQSAGGTLGVYLSPQWTAAPIVATSADLDGTVAVLGASGLRAKTTS
YDLVSSSDISGSFADVTTPNSLLSAAVTYDADGATLVLTRNATTSLAGLSLAGRSLAAGV
DLNYQRLSLSSPLSPVLDSFYSGTDGQVANLLNQMSGAPLADAKTAGMASFGTINGQISQ
QLAATRGTGALPSGGSALLSYGAGEVNLSGNAYAATGSASGSSSPWAALSPAAAPAPQNG
VWLRPFGNWGSYDTGNGTVSSSGGGVLGGIERAFGDDARGGAVFSYQTANLGFTTPASGS
VDQWTASLYAEKQWGAFYANLFGTYGYQTYDMSRSIAYGGTLFTARSNFAGNAGAVVGEA
GYDYSYAPGAKLEPYLRLAYAALGTETFAERGAGVFNLNVAADTTQSLQSTLGLRVIQPL
SFSTLPVTLRLEAGWQHEYLDTGASLGAAFLSDSTIAFNILSGGPSDMALAAAGLSFALS
ANLDGYLEYRGSFGDGYSNSTASAQLRLRF