Protein Info for GFF4512 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 23 to 25 (3 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 178 to 202 (25 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details TIGR01400: flagellar biosynthetic protein FliR" amino acids 10 to 248 (239 residues), 171.6 bits, see alignment E=1.1e-54 PF01311: Bac_export_1" amino acids 10 to 245 (236 residues), 164.5 bits, see alignment E=1.6e-52

Best Hits

KEGG orthology group: K02421, flagellar biosynthetic protein FliR (inferred from 46% identity to azc:AZC_0655)

Predicted SEED Role

"Flagellar biosynthesis protein FliR" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>GFF4512 hypothetical protein (Xanthobacter sp. DMC5)
MSLLAREAVLAAFLVFCRVGGALMLMPGVGGRHIPMRVRVFLALALSFAFLPLVLDQVAP
KVRTAGSGDFVFMIAGELLTGLLIGLLARLYVTALQFATSFIAQAVGVSPMPGASVEEDE
QLPILATLIVFSATALIFIADLHLELVKGLVDSFARVPPGSLLAVRPALVDLVDQMSAVF
LVAVRLCGPFILYSVMVNFAVGLINKFTPQIPVYFVATPFVTAGGLLLLYVSVEPLLSAF
LVAFSQWLKAG