Protein Info for GFF4505 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details TIGR02492: flagellar hook-associated protein FlgK" amino acids 6 to 482 (477 residues), 279.3 bits, see alignment E=4e-87 PF22638: FlgK_D1" amino acids 104 to 311 (208 residues), 108.3 bits, see alignment E=4.8e-35 PF06429: Flg_bbr_C" amino acids 444 to 482 (39 residues), 26.6 bits, see alignment 3.4e-10

Best Hits

KEGG orthology group: K02396, flagellar hook-associated protein 1 FlgK (inferred from 50% identity to azc:AZC_0648)

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (484 amino acids)

>GFF4505 hypothetical protein (Xanthobacter sp. DMC5)
MSLSLAFNTAQSSLSANAAKIALSSRNVAGAGEASASRKIAVTTTAADGSVRVVSITRAT
GSALFDRMLGATSDSAAQQALASGLDRLAQTVGDPQDPTSPVARLGTLKDALTRAADTPD
DMTLAQAAVTAAQDLASSLNTATDTVQQVRTDADAAIATSVGNVNDLLHQFEAENSGIVK
GTAAGADMTDALDRRDAILAKLSEEIGISTVTRANNDIVIYTEGGATLFETTARAVGFTP
SHTLDAKTDGGSVFVDGVSVTGRDATMPVRSGRIAGLTQLRDTAASTYQTQLDELARGLV
DAFAETDGAGTVRAGLFVPAAASATVPGGLARGIAGSLAVNAAADVAQGGDIRLLRDGGM
NGAAFASNTTGAASFAGRLKEMVAAVDAPRTYDGAAQLADNQSLVFFGTASVSWLQGARK
AADTRLDSEKTVLAQASNALSAATGVNLDDEYASQLELERGYQATSKLMGVVNQLYDSLF
QMIG