Protein Info for GFF4490 in Variovorax sp. SCN45

Annotation: Site-specific tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 PF02899: Phage_int_SAM_1" amino acids 25 to 107 (83 residues), 54.7 bits, see alignment E=1.1e-18 PF00589: Phage_integrase" amino acids 150 to 318 (169 residues), 136 bits, see alignment E=1.1e-43

Best Hits

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 86% identity to vap:Vapar_0902)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>GFF4490 Site-specific tyrosine recombinase XerC (Variovorax sp. SCN45)
MSSVASSSEPSGPATPAVSAASGWVEKYLEHVRVERRLAARTVELYAFHLKSLTDHAAEA
KLSLDHVQTAHIRRWMAQLHAAGREPRGIALVLSCWRSFYRWLGHEGLVGFNPVQDVHAP
KAGKPLPKALGVDDAVRLAELYDPEADPWTEARDSAIVEMLYGCGLRVSELTGLDAQASS
SARGWVDLDAGDANVLGKGSKRRIVPMGSKASEAVRDWLAVRGDCAALATSHLRDPRAAA
ALFISAKGVRMSSQAVWKLLRERSLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELL
GHASISTTQVYTRLDFQHLAKVYDAAHPRAKAKPENDK