Protein Info for GFF4484 in Xanthobacter sp. DMC5

Annotation: Flagellar biosynthetic protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 61 to 89 (29 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 216 to 238 (23 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details TIGR01103: flagellar biosynthetic protein FliP" amino acids 65 to 274 (210 residues), 287.8 bits, see alignment E=2.1e-90 PF00813: FliP" amino acids 65 to 270 (206 residues), 254 bits, see alignment E=5e-80

Best Hits

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 70% identity to mrd:Mrad2831_1683)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>GFF4484 Flagellar biosynthetic protein FliP (Xanthobacter sp. DMC5)
VRAPARHPALVSALLATLLLSAGPAFAQGAAQGIAQAASQMPALEQLLPEGGGSTAGRVI
QMVALLTVLSVAPGLLIMVTSFTRFVIAFSFLRSGLGLPSTPANLVLVSLSLFMTFYVMG
PTFDRAWQDGVKPLTENRMDEEEALQRIADPFRDFMLTHVRGKDLKLFADIASRDKPAEE
TANAPAAPEKAGEEKVPMRVLIPAFMISELRRGFEIGFLIVLPFLIIDMIVATLVMSMGM
MMMPPAVISLPFKILFFILIDGWNLLVGGLIRSFF