Protein Info for GFF4474 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF08881: CVNH" amino acids 185 to 293 (109 residues), 32.7 bits, see alignment E=5.5e-12 amino acids 255 to 371 (117 residues), 35.3 bits, see alignment E=8.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>GFF4474 hypothetical protein (Xanthobacter sp. DMC5)
MMNFRVWAAALLCLSATPAAAAGDIPVGSYLESCRQVQVRWGRDLAAFCATRAGEWVVSR
LDDFPSCDGDIANRNGQLICKETPAPGSLYGTLAPSPPPRPQPPAPPPVVQRPPAGTYTS
TCRDLRLEGSWLSATCRDGWGNWREAGLSLTGCPLGADIANVEGRLACRSFTSQHAGDYP
PPGSYQETCREISLESGTLRGSCLSRRGAWLSSSLYLSWCSNREVVNDDGILRCASSASS
AGSGWNTTPAPYGSYRSTCRDVTVSGGFLRAMCQDRGGTWRTSVPLQLSQCLQGADIYND
NSDLRCSRGGSSGFSDRPPPGSYMASCREIRVVAGWLKASCQDRNGRWSEATTAVSWCSP
GRDIANDNGRLSCR