Protein Info for PS417_22900 in Pseudomonas simiae WCS417

Annotation: cytochrome C oxidase subunit II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 PF03061: 4HBT" amino acids 31 to 103 (73 residues), 62.7 bits, see alignment E=1.7e-21

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_1023)

Predicted SEED Role

"cytosolic long-chain acyl-CoA thioester hydrolase family protein" in subsystem Serine-glyoxylate cycle

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U137 at UniProt or InterPro

Protein Sequence (137 amino acids)

>PS417_22900 cytochrome C oxidase subunit II (Pseudomonas simiae WCS417)
MTTRFEEIQRRTDLSVTHVTKAVFPPTTNHHNTLFGGTALAWMDEVSFITATRFCRLPLV
TVSTDRIDFNHAIPAGSIVELIGRVIKVGNTSLKVEVEVFVESMSADGREKAIQGVFSFV
AIDADKRPVPVLPGFVD