Protein Info for GFF4451 in Xanthobacter sp. DMC5

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1167 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 246 to 263 (18 residues), see Phobius details amino acids 283 to 307 (25 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 342 to 366 (25 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details amino acids 416 to 437 (22 residues), see Phobius details amino acids 442 to 461 (20 residues), see Phobius details amino acids 468 to 486 (19 residues), see Phobius details amino acids 499 to 521 (23 residues), see Phobius details amino acids 604 to 622 (19 residues), see Phobius details PF12860: PAS_7" amino acids 654 to 762 (109 residues), 106.9 bits, see alignment E=1.4e-34 PF00512: HisKA" amino acids 804 to 868 (65 residues), 40.9 bits, see alignment 3.5e-14 PF02518: HATPase_c" amino acids 913 to 1020 (108 residues), 82.7 bits, see alignment E=5.2e-27 PF00072: Response_reg" amino acids 1046 to 1156 (111 residues), 53.4 bits, see alignment E=5.6e-18

Best Hits

KEGG orthology group: None (inferred from 75% identity to azc:AZC_3923)

Predicted SEED Role

"Na+/proline symporter / Sensor histidine kinase PrlS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1167 amino acids)

>GFF4451 Sensor histidine kinase RcsC (Xanthobacter sp. DMC5)
MLQASVVIFVALAYIGLLFAIASYGDRLRPGAGRGAARPMIYSLSLAVYCTSWTFFGSVG
LATTQGFDFLTIYLGPIILMTVGAPLFLRVVRLAKANNITSIADFIAARYGKNQGIAALV
AIVAIIAAIPYISLQLKAVSASLVALLGHFAGEHGRGTLVGDLALFVACAMAAFAILFGT
RHTDATEHQNGLMLAIATESLVKLAAFLGVGLLVTFVIFDGPFSLWYAAREASAVAPFER
GLSLENWLTMTILSGGAFMLLPRQFHVAVVENKGESEIRRARWLFPLYLVLINLFVVPLA
LAGMTLFPLNLVDSDVYVLAVPLAAGFDSLALLAFVGGLSAATAMVIVECVAIAIMVSND
LVMPLVLRRRAAKPEGEPREDMTGLLLMVRRISIFAIVLLAYLYYRTTGEAQLAQIGLLS
FAAIAQVGPAFAAGLIWQRATAAGAIAGIVVGGATWAYTLMMPSLAEAGLISAGVLQNGP
FGISLLRPTALLGLTAGPLAHGVAWSLGLNTLALVIVSFLTRPSQIERTQARLFAGTGDR
PPARPAFLRWRSSVSLGELMATVERYLGAERARAAFDSYARQHGFALDTHREADAGMVRH
AEHLLASAVGAASSRLVLSLLLRKRAVSTKAALKLLDDASAAIQYNRELLQSAIDHVRQG
IAVFDRDLRLVCWNRQFGQMLDLPGECYAVGVPLTDILAAAPADEDVAGDISARVARYVT
PDPDFSERLHQRGAVIEARSDPMPDGGIAVTFTDITASVEAALALERANETLEKRVRERT
EELERLNGALELAKAEADEANLSKTRFLAAASHDILQPLNAARLYATSMVERAKGSEEER
LAGNIDASLESVEEILGALLDISRLDSGVMRPEFSAFRIADVLKPLETEFAPLAREKNLE
LTFLPCSLAVRSDRRLLRRLLQNLVSNAVKYTQRGRILVGCRRVGGKLRVEVYDTGVGIP
RSKHKLVFQEFQRLDQGAKAARGLGLGLSIVERIARVLEHPVALRSTHGKGSAFTVELPV
AVSMPEEREAAPSPARRGAQLDGLTILAIDNEPTILEGMQMLLTGWGCDVITAANAQGAI
EAVRHRRKKPDVALVDYHLDGGHGIEAIMSLRWKLGKIPAVLITADRSKKVRDAARAADM
EILNKPLKPAALRAILAHWRIARAAAE