Protein Info for GFF4451 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 229 to 254 (26 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 297 to 316 (20 residues), see Phobius details amino acids 322 to 344 (23 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 382 to 402 (21 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 208 (175 residues), 45.6 bits, see alignment E=2.5e-16

Best Hits

KEGG orthology group: None (inferred from 95% identity to sch:Sphch_4194)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>GFF4451 hypothetical protein (Sphingobium sp. HT1-2)
VIRGWRLEGSTANAPRYKAGSQANGRWPASFFVLLLAAAAASAGQTAILAFLPTLVDPAR
GALSSSAHDFHVASLTAVHPLAALLAAPLWGWIADRVDYRAMLRAALVILALVTAPIGLV
GLPELYALRLVAGMAAAAIIPLGLLCASFAANGRADQARRFTWLTAFVFLGDLAGPLVAE
VSAAILPRAPLMILALGIGAVGAALCAVRLPRWCAPCIDGGDLPAPTLGATLILLFVTIV
AGGGLAAMHVNLLVTRSVISLSREEIAWMLSLCGLGMLAAQIFHARLDWLVTMPRRLAGL
TLGLLAAALFLFPVAASMAELSGIIVAAGWSSATLRLVTSFWISGAAAPSGLKLGLQHSA
ASIGQALAPLAIAVVAPGAQHLVLWGIGGLSLALLVSLPLAWRPRAIVKSSA