Protein Info for GFF445 in Sphingobium sp. HT1-2

Annotation: Rieske (2Fe-2S) domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 PF00355: Rieske" amino acids 70 to 153 (84 residues), 48.4 bits, see alignment E=7.3e-17 PF00848: Ring_hydroxyl_A" amino acids 197 to 461 (265 residues), 78.5 bits, see alignment E=6.7e-26

Best Hits

KEGG orthology group: None (inferred from 47% identity to nar:Saro_3534)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>GFF445 Rieske (2Fe-2S) domain protein (Sphingobium sp. HT1-2)
MNMESGPMPAGDARCPAISTQDIIARDRIAAPGWVRSESYAFLGSEDVSTDRYIDPDFAR
REMDSLWTRSWQFACREEHIPEVGDYQVYEIGRHSFIITRVAPDEIRAYYNACLHRGTKL
RASGSAGCASEFKCSFHGWSWNVDGSSKSITCPWDFPHVDPANNSLPQVRVRTLGGFVWI
NMDPDAPSLEAYLGAEALAHIQAWKLEDRYIHLHVQKSFPANWKLTIEAFMEAYHVIETH
PQVAPSNADANSQYDVYGDHVNRFISCLGIASPHLEGRFSEQDILDQFTVGDASVLCEDR
PQVGDGTARQAMADLFRTMFGAATGSDLSATSDSEMLDCFSYTLFPNTYLFPGVSLPMVY
RFRPDPKDHRRCIYEVFFLRPVPDGGARPEPAEPILLTDEQSFCEAPGMDAGFGRILDQD
TDNLFLQQEGIEASAKRGLTLGNYQEIRIRHFEQAVDRYVAMPPLRPGR