Protein Info for GFF4448 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 200 to 220 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 12 to 236 (225 residues), 39 bits, see alignment E=4.4e-14

Best Hits

KEGG orthology group: None (inferred from 74% identity to sal:Sala_2409)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>GFF4448 hypothetical protein (Sphingobium sp. HT1-2)
MKKIRFTPLFFRRIHKWVGLILGVQFLLWALSGSMMALLDQEKVGGHSAQASHQHALPAG
DYIAPAKLALDGPVLGIALRSLATRPVYELRSTTGTRLIDATSGAPVRVDEQVARDVATM
VNEAPIRKATLLAEPNVEAREHEGTMWRLDFADAENSSAYISADTGRFLVMRGDTWRTWD
FFWMLHNMDYVNRTSFNHPLIVFVAFGTLWLSGTGFYLLFKSFSRADVRWLRRRRKSAVK
LGAG