Protein Info for GFF4439 in Variovorax sp. SCN45

Annotation: Probable transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 transmembrane" amino acids 308 to 328 (21 residues), see Phobius details PF13719: Zn_ribbon_5" amino acids 3 to 39 (37 residues), 59.4 bits, see alignment 3.4e-20 TIGR02098: MJ0042 family finger-like domain" amino acids 4 to 39 (36 residues), 49.2 bits, see alignment 1.6e-17 PF13717: Zn_ribbon_4" amino acids 5 to 38 (34 residues), 33.4 bits, see alignment 5.2e-12 PF11906: DUF3426" amino acids 315 to 461 (147 residues), 113.9 bits, see alignment E=1e-36

Best Hits

KEGG orthology group: None (inferred from 65% identity to vpe:Varpa_1009)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>GFF4439 Probable transmembrane protein (Variovorax sp. SCN45)
MSLVTRCPACTTTFKVVRDQLRISDGWVRCGRCSHVFDATLDLHEAPDGASASASPAMQG
GYMPGLVESPPEPKAAPSPAPVPPPPAVEAPAQPAAEDADFFDDEPEHHQSRQDPLPEAS
GPSLPPAVMPPLPSPLDFSLALPEHGIAADEPWSDLDATEPAWKPPQRTLPPFPSIDLNL
ASAPPSPPPPVPPLPAKSQARMRTLVERASDDGEGEREQEEKDHDQVQMQKALRRARIKS
AKIASAKAREERAAAKAASSASAVQAVQTESEPDFSLSSTFEPPPGHPLSEEDDPAETLP
GFWQRKSVRVLLVLLAVLAVLLLVVQVIRHERDGIAARQPNLRPALAMLCQYTGCELAAL
RQIGDIVIEGAAFAREKSGSNDYRLSFTLRNGATVPLAMPAVELSLLDTQERAVVRRVLM
PADYGAPAVLAARADRAASLPLTLSASEAAALPPIAGYRVEAFYP