Protein Info for GFF4437 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 PF00301: Rubredoxin" amino acids 24 to 69 (46 residues), 69.2 bits, see alignment 2.4e-23 PF11939: NiFe-hyd_HybE" amino acids 102 to 277 (176 residues), 171.2 bits, see alignment E=1.4e-54 TIGR03993: [NiFe] hydrogenase assembly chaperone, HybE family" amino acids 103 to 240 (138 residues), 158.7 bits, see alignment E=4.5e-51

Best Hits

Swiss-Prot: 47% identical to HUPJ_RHOCA: Probable rubredoxin HupJ (hupJ) from Rhodobacter capsulatus

KEGG orthology group: None (inferred from 77% identity to xau:Xaut_2180)

Predicted SEED Role

"Rubredoxin" in subsystem Rubrerythrin

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>GFF4437 hypothetical protein (Xanthobacter sp. DMC5)
MSQHSFFDGSYLGDRARLAPTARLECKVCWHVYDPAEGCEAWQIPPGTPFNALPDHWRCP
VCDGARDAFMVLDGGTPDLPAVMRPSLVDPALERQLAEAPGLFEAVFREIHAAKMKGVPF
VNGTLGVKAVGFRIHAGRVMGVLVTPWFMNIVLLPNTTDDWSQLRTGEKELIDFPSGTYE
FLAANRPETGPYKACSLFSPMFDFSSMLQAVETAEAVMPGLLDAGNREDGTRSGEIRRRA
EAEEAARVAAETAAAAPETEAPRREAPAELSRRSLILGPRAGAEDLRARAEDLRDGAA