Protein Info for GFF440 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Predicted SEED Role

"EF hand domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1045 amino acids)

>GFF440 hypothetical protein (Pseudomonas sp. DMC3)
MTEPLDLSSNYTSANYRYKEGGDGFVVENGKKIVDCSHMVNLLLTGAGYQVPYQNTAGLN
SAAALQYYDVISPANVRRGDIVLWINVISNRDNKTLNHTGIVEHYDSTLDSQYGEFFGAQ
SSGPATAKFGAYSKAYFWPVPTKFLRVKESTRTGEGSAPAPAPAPVESTPLMNFQYPFRK
ADGSQFKDAEEIFKALESESSGNFLLGNHGFWHGGIHITHKTAPQCVRDEPIRCIGDGVV
VAYRLNEDYLKTEFEGSSTTEELKYSNSFCLVKHDYKSPPNKEVVPNTSNELVFYSLYMH
LLPYQRYADEPEQTGHQKIKMIASGFKARSDVAGATGCIEYGSISAGTQIEILEEHSDHI
HAKGKLIKGTVGGRTPGQDFWFAYKQNGVAYPRGDGSASWKAITAPERKKPDYWKGKVRA
IVTGSGLTLRVAPSPQSNGALAGAAMRQVNSLGQNEDLVLCTNSVIEFDSGKVFSLKIGS
KSYKMAECCFVPSTSGTATGLKSHSTPVPATFWACVEKPYVQLLGLIPTEFDKVVAMDTA
IKAGDVIGFLGLNETLAGPDGGVSRSYQVHVEIFSADPRIEDFLKNKAAVKQGKQYLHLP
ANTTLKSKPPLTGVVTISNETFVELGKTVIYKDPEEWYEVTVVDESESKSGLLKKEGAEL
IAQHDWEKLGFRVVKESNSNSDGFLDPDDMPEFFQTLYNDLDRFGNRDQKVTPEDFPIAL
KNIEFRDHWSKLIAYHPTEWRSKSDSSKWARLDTLLENYPSVLNHEKERIDSLIFWDDSV
IQSKGLGDGVLWHFHPIAFLGNQIGSRGKIKITVEMLKRVFEGLKNTSEQDVLLAEVATQ
LNENCERYKLDTPLRLSHFFAQVRQEIGSKCAVVEDFTYGVPGLKGTFKYFRDHPDEATL
YGYPGSNKYVSHENQIAIANRAYGGKLGNGNISSGEGWKYRGRGLKHLTGKANYQAFKDY
HKTFWDEEVDFVGQPDILHTQFKYSVRSGVYFWLKNNIFVEADKGDADENVDAVTRIINR
DTDSYDERRKHFQRIYKNEKIFETV