Protein Info for GFF4398 in Sphingobium sp. HT1-2

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1031 signal peptide" amino acids 20 to 20 (1 residues), see Phobius details transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 395 to 418 (24 residues), see Phobius details amino acids 432 to 456 (25 residues), see Phobius details amino acids 469 to 494 (26 residues), see Phobius details amino acids 535 to 555 (21 residues), see Phobius details amino acids 865 to 885 (21 residues), see Phobius details amino acids 892 to 912 (21 residues), see Phobius details amino acids 918 to 942 (25 residues), see Phobius details amino acids 963 to 982 (20 residues), see Phobius details amino acids 991 to 1013 (23 residues), see Phobius details PF00873: ACR_tran" amino acids 12 to 1016 (1005 residues), 529.7 bits, see alignment E=7.1e-163

Best Hits

KEGG orthology group: None (inferred from 50% identity to cvi:CV_3924)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1031 amino acids)

>GFF4398 RND efflux system, inner membrane transporter (Sphingobium sp. HT1-2)
MSIDMKGINLSRWALTHQQMVGFLLVLAAVAGLFSYMALGRKEDPEFTVKTMMITVGWPG
ATAQQMSQQVIKPIETVLTENIAEIDYVKSKARPGQATLNVTLISTVKSSAVPDIWYRIR
KTVTDNRADLPNGVVGPAFNDEFGTTYGNIYAVTGDGFSYPVLKRYAETLRDRIQALPDV
AKTQIIGAQDEAIYVTYDSARLAMSGISAQAIADALDTTNAVAASGIVEAGAERVRMQVT
GDFASVEAIAATPIVANGKSVRLDAIAKVERKPVHPATFRMRFGAKDAVGVGISLRSDGD
VARLGEDLKHTIAALQSEMPVGVDIHTVSDQTRVVDESVGEFTTSLIEAIVIVLAVNFLS
LGWRPGIVVALCIPLVLAMTFVCMLYVGIDLQRISLGALIIALGLLVDDAIIVVEAVATH
LEAGWTRTRAAVSAYSVTAVPMLVGTLITVAGFLPIAMSKATASEYVISLFQVIAISLIL
SWVVAVIFTPFIAYHLLPQRADARDDAGEPEEQYEGRFYGWFRRMLDRCLDRRKTVVAVA
LAMFVGSMLLFQIGVPRQFFPASDRPELVVDLQLSQNASFAQTQAVAARMEQLLARDDRV
VSTTAYLGGGSPRFYLPLNVQTPDITLAELVLQTRDEEAREGVIASIQSLFATHFPEARG
RVSRLENGPSVGQPVQYRVAGPDLTQIMPVAKRLEELIRADSHARDVNSDLGEPLKAIRV
DLDQDKVRALGLSTQAVQQSLQAAIGGAGTTSFRDRDLALEVVLRLSAAERTDLGRIANL
PISTPNGAVPLAQLGHVSAGSEPAVIYQRNRQPTITISADVEGEQASDLTKRIEPQIEAL
RRDLPSGASIVKGGSEEQSSINQKATMAAVPFAIFVIVILLMLQLQNVKRMLVVLATGPL
ALIGVALIMALFRIPFGFVAMLGSLALFGMVLRNSVILIAQIDTLSGHGLAMREAVREAA
VHRLRPILLTALAAILAMIPLTRSTFWGPMAWAIMGGLMVATILTLIVLPALYELVFDRP
QHRADSQEISA