Protein Info for GFF4397 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 897 PF06925: MGDG_synth" amino acids 18 to 186 (169 residues), 46.1 bits, see alignment E=6.1e-16 PF04101: Glyco_tran_28_C" amino acids 212 to 333 (122 residues), 33 bits, see alignment E=6.3e-12

Best Hits

KEGG orthology group: None (inferred from 84% identity to tmz:Tmz1t_0325)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (897 amino acids)

>GFF4397 hypothetical protein (Variovorax sp. SCN45)
MSTTGKVVIFYSSIGYGHICAAQSIRDEIMRQSPATPVLLQDIRAFMHPVWRRVDERLYW
FVANHLPECFESLFRAMQTRGSRAPSLSMLPNDYPEESVLAYLTAQRPDAVLATHYGAAQ
VLGTLREKGLLSDTRIGWLHTDFFEGYFPRISKRIDRTFLAHPELETRWLAAGVPADKVV
TSGMPVRIPATSADARRATLQGLGLSADVPTLLLTGGKEGVGDYPGVIGSVVRHGPGRLQ
IIAVCGTNSGQHEVLADLQGKLPERATLKLLGLLSRSDMASCMAAADILVTKAGGMTPAE
AFALGVPTVLLDVISGHERENAALFQRQGLARFAASADDAGKFAMELLCDPAQREAMLRA
QREFRQSIDIASIVRFALDDGFRPAYPLPDYGIENGAPVQGIDQALAQLDAEAPAEVELL
LSYATSQTPQRVVLENPFGHLAIRISGIVYSANYIADPSVDPNFLQHVSLPDYLYGIDRP
SRSQVHTNTYGMAYGRETLGLRVQGIPAGCRAAMVAEAHRIETGFRDASLRWSRSDLNCA
DVVARILAAGGYDDRSLYDRAGLPSMPLDLFERMRARFEEDPALRKELVAYRLLPGTQAS
YRFSRFPLSMGQPLRSMARVLGDAQPDALEQAVARQVTSYFGDRQLYVEDLRACWPASPA
AGRPHLALERAILADLRRLLAAYVKLPLTRIERLGNLPAAAAFYRLVDRGIELARLATEH
AEDDPRPRTYRLRALFTQLVEAYGRINPQRLEARHVQAYLARLWAFESALGRDVPPGTSS
ALLHVWWHRMAALARPSARSHPRSRETSGFSGMRVDPGEVEPSGDAQEQDAHGLEAEPAT
RLTLGDLEEPVQGFHEAASPVGLGPGDDAIEGVSDQPGEVPHRLDDPYDRCHRSRGS