Protein Info for GFF4394 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1159 transmembrane" amino acids 718 to 737 (20 residues), see Phobius details PF02775: TPP_enzyme_C" amino acids 451 to 536 (86 residues), 23.6 bits, see alignment 6.2e-09 PF01558: POR" amino acids 724 to 910 (187 residues), 88.3 bits, see alignment E=1.1e-28 PF20169: DUF6537" amino acids 941 to 1139 (199 residues), 247.4 bits, see alignment E=1.8e-77

Best Hits

KEGG orthology group: K04090, indolepyruvate ferredoxin oxidoreductase [EC: 1.2.7.8] (inferred from 85% identity to azc:AZC_0699)

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.2.7.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1159 amino acids)

>GFF4394 hypothetical protein (Xanthobacter sp. DMC5)
MALKPVSLDDKYDLSQERVFVSGTQALVRLALMQKERDRRAGLNTAGYVTGYRGSPLGGL
DQQFLRAEKVLKANDIKFMSGLNEDLAATALWGSQQAELRGEGKYDGVFGLWYGKGPGVD
RSGDVFRHANNAGTSRHGGVLALMGDDHTCESSTTAHQSEFHFVDVMIPVLNPAGVQEII
DYGLYGWALSRFAGTWVGLKAVKDTIESTGIVDGRLDRVRIEPALGFAMPPGGLNIRLGD
TPIAQEERLQEFKRDAVLHFLRANRLNRFITSGGARPRIGIATVGKSYLDVRLALDELGI
DEVRANDLGLRIWKVACPWPLETQGLTEFAKGLDLIMVVEEKRSLIEVQVREELYGTANQ
PVCIGKKDEQGRWMFPVKGALDPNDIAIQLGRRLLAYGDIPDIAARVAELEDAQRVLAAT
SDVATRIPYFCSGCPHNSSTKVPEGMRAYAGIGCHYMVQWMDRETTGFTQMGGEGANWIG
EASFSKRNHVFQNLGDGTYNHSGYLALRAACAAKVNVTYKILFNDAVAMTGGQKHDGDLT
VPVIARQVAAEGVERVVVVTDEPEKYPANTLWPAGLTIHHRDELDAVQRELAAVPGVTVL
IYDQTCASEKRRRRKRGQFPDPDKRVLINERVCEGCGDCGVKSNCVSVQPLETEWGRKRE
IDQSSCNKDFSCVNGFCPSFVTVKGAKPKKSAGAASGADSWPELPEPAHPEIHGTYGVIA
TGVGGTGVVTIGAILGMAAHLEGKACGMIDMAGLAQKGGAVYSHIRLANDPADITAIRVP
ARGADVVLGGDLVVAGTKKVLAAVKPGKTICVVNTHEVLPGDFTRNADYSLPTERIKRTI
RDLVGEPQTHFIEASRLAQALFGNALAQNIFMVGYAYQFGALPLSAAAIERAIELNGEAV
AMNKAAFLWGRRAAHDPAAVEAIATPKGTISSDARRLSQSLDEVIARRVADLTLYQNAAY
AARYKALVDKVRAAEGAKAPGRGGLAEAVAKNLYKLMAYKDEYEVARLYADGAFRAQADA
AFDGDLRFEFHLAPPLLARRNETTGEPRKITLGPWMMKGFGLLAKLKGLRGTAFDVFGYT
DERRTERALIADYERTVGELLAKLDPANHAIAVAIASIPEKIRGFGHVKLRHLEAAKAEE
KDLLARFRNPPAPTAVAAE