Protein Info for GFF4391 in Variovorax sp. SCN45

Annotation: Acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1107 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 381 to 403 (23 residues), see Phobius details amino acids 409 to 431 (23 residues), see Phobius details amino acids 460 to 478 (19 residues), see Phobius details amino acids 484 to 507 (24 residues), see Phobius details amino acids 562 to 583 (22 residues), see Phobius details amino acids 942 to 961 (20 residues), see Phobius details amino acids 968 to 988 (21 residues), see Phobius details amino acids 994 to 1018 (25 residues), see Phobius details amino acids 1038 to 1058 (21 residues), see Phobius details amino acids 1064 to 1089 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 17 to 1091 (1075 residues), 490.7 bits, see alignment E=8.4e-151 PF02355: SecD_SecF_C" amino acids 940 to 1086 (147 residues), 21.4 bits, see alignment E=1.5e-08

Best Hits

KEGG orthology group: None (inferred from 94% identity to tmz:Tmz1t_2073)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1107 amino acids)

>GFF4391 Acriflavin resistance protein (Variovorax sp. SCN45)
MTQQRLNFAGFLAKHFITSKLTLVFIIAVALMGVVAVLQTPREENPQIIVPAAAVMVGLP
GASASEVEALVVTPLEGVLSELSGVDHIESTSRNSQGIVQVQFKVGESKEQSLVKLYDRV
MASRAWLPADATTPLVQSIDADDVPIVTFTLASSKYDDYALNRMAERMAERLRSTENVSV
VSLRGGQHREITIELDPDRLQAYGVTLGQARAAFPASNLTLPLQPTVRDGQVQAIKLVAA
YTSAEDVRNQLVAVRDKRPVYVRDVATVTDGPPSEPATASRLSFGPGDPRFGTADATDLP
AVTIAVAKKKGTNAVLVANAVIDRMQRMQASFVPQDIQVVVTRNDGQKADDAVNLLLEHL
AIALVTVGLVLILFLGWREALIVMITVPLIMGITLTANLLGGVTINRVTLFALILALGLL
VDAAIVVIENIHRHYASRKPKADKQAETVLATNEIGNATNLATFAVMLVFITLLLALTGM
PRQYFFPIAVTVPVAMAASIVVAYIVVPWASNRWLHRHEVLREESSWPETEHGQLVHGHG
TPGRIERLYLRLFGPLQQRRNVRIGFALAVLLLMAVSLMQGGWQFVRPAGVGGAVSALGV
PIGFLPKDDQNTFNVVVSMPETTPVEDTDRLVRQVTAVLAREPHVLNYQTWVGQAGVADF
SGLFKGTAARAGSHVAEIRVNLTDKRHRKESSIDVVRELRPRVEAVRAAWPGAEVALVEQ
PPGPPLRSTVLAEVYGPDAEGLRTLSAQVREAFAQTYDTVDITDTEPEEVREHRIVPDKD
KAALSGVSTAQIAEALALVYGGTTLGRAHVPDEKLPVSVRAFVPRRFEVDPARLDRVFVD
NAAGRPVPLAELVKVVPASVDRPILHRDNEKVTFVGAELSDSVPLYAVLDLQRRLHGITA
PDGRPLRTGNLRFKEDVPDTIDGYQLLWGGEMRMTLDVYRDLSLSLGGALLIIYFALVAY
YRSFIVPLVAMSAVPLGIIGIFPGHWLVGVDFSATSMVGIIALAGVVIRNSLLIIDFIQD
NIRRGMPLREAVREAGAVRLRPILLTMLAIIFGSAVMVTDPVFGGLAVSLIFGTLVSTAL
TVFVVPLLYELHAKRHTAPAATGGDHA