Protein Info for PS417_22460 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family" amino acids 1 to 237 (237 residues), 328 bits, see alignment E=2e-102 PF20772: TACO1_YebC_N" amino acids 5 to 75 (71 residues), 108.1 bits, see alignment E=2.5e-35 PF01709: Transcrip_reg" amino acids 84 to 237 (154 residues), 206.6 bits, see alignment E=1.9e-65

Best Hits

Swiss-Prot: 92% identical to Y4766_PSEF5: Probable transcriptional regulatory protein PFL_4766 (PFL_4766) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: None (inferred from 99% identity to pfs:PFLU4916)

Predicted SEED Role

"FIG000859: hypothetical protein YebC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U397 at UniProt or InterPro

Protein Sequence (248 amino acids)

>PS417_22460 hypothetical protein (Pseudomonas simiae WCS417)
MAGHSKWANIKHRKERQDAKKGKIFTKWIRELTVAARQGGGDPGSNPRLRLALDKALGAN
MSRDIIDRAVARGAGAADTDDMVELSYEGYGPGGVAVMVECMTDNRNRTAAAVRHAFSKC
GGNLGTDGSVAYLFERKGQITFAPGTDEDALMEAAMEADADDVVTNEDGSIDVFTSFAGF
YAVRNALEAAGFKGTDAEIVMLPTTSAELDLDGAQKVLKMLDMLEDLDDVQNVYSNADIP
EEVAEQLT