Protein Info for GFF4383 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF04754: Transposase_31" amino acids 7 to 208 (202 residues), 298.5 bits, see alignment E=1.2e-93 TIGR01784: conserved hypothetical protein" amino acids 8 to 307 (300 residues), 176 bits, see alignment E=7.1e-56

Best Hits

Swiss-Prot: 51% identical to YTL2_SALTY: Recombination-promoting nuclease pSLT051 (PSLT051) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 98% identity to seg:SG0489)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>GFF4383 Mobile element protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MERLPTTPHDAVFRQMLMQKEVARDFLAIHMPEDFLAICDLDSLKLESGSFVEDNLRSRY
SDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAMQRHLDAGHDTLPLVVPIL
FYHGPESPWPYSLNWHNMFVKPDMAKALYSRDFALVDLTTMPDNQLLQHRRIAMLELLQK
HIRQRDLSELLDPLITLLTQDHLTDAQLSVLINYMLKAGNAAEPGALIRQLAQGAPQYKE
QLMTIAEWLEEKGRTEGLQKGLQKGLEQGLAQGREAEARAIARKMLANGLEPGLIASVTG
ITPEELSTLSH