Protein Info for GFF4381 in Xanthobacter sp. DMC5

Annotation: putative ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details amino acids 308 to 333 (26 residues), see Phobius details amino acids 349 to 368 (20 residues), see Phobius details PF12704: MacB_PCD" amino acids 16 to 237 (222 residues), 54.2 bits, see alignment E=2.4e-18 PF02687: FtsX" amino acids 267 to 373 (107 residues), 40.2 bits, see alignment E=3.2e-14

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 88% identity to xau:Xaut_0381)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (381 amino acids)

>GFF4381 putative ABC transporter permease (Xanthobacter sp. DMC5)
MNIALRDMRFSALRFALTAVGIGMLLGATMGMIGLYRGIVHEALLIINDIGADLWVVEGG
RSGPFAETSAVPANLDRRVEGVPGVSGTRRFIQYNQQYTIDGKPVRLAVTGVDYPKDSAA
WIPLIDGRAFRSTRYEAIADQSTGLLVSDVIRLGHDDYTVVGLTKGQVDMGGDGMFFVTI
PDAQSINRVLPSEAVLLNRLAKGRSRMGMGDGGSVAAVMVELKPNADVKEVQRRIKAWGD
VEVLTQDEERDMLLNGRLWRLRVQILAFTAMTLLVAGSIIALTIYMLTLEKINQIALLKL
IGARDRVIIGLIVQQALWIGVLGYGVALAISFTLYPNFPRTVLLLPDDLAWIAFSLLLIS
LFASWFAIRRAMRVRAQEVLA