Protein Info for GFF4370 in Sphingobium sp. HT1-2

Annotation: Uncharacterized methyl transferase/DEAD-like helicase/Strawberry notch C-domain protein mlr9704

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 681 PF13872: AAA_34" amino acids 385 to 666 (282 residues), 326.4 bits, see alignment E=7.3e-102

Best Hits

Predicted SEED Role

"FIG01095610: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (681 amino acids)

>GFF4370 Uncharacterized methyl transferase/DEAD-like helicase/Strawberry notch C-domain protein mlr9704 (Sphingobium sp. HT1-2)
MTDLFDTAPARAGNATAAARHVAASIASGVKITRAKLNDAMANAFGGSDADGHWTQRESF
EILEHATVLAVNGGAKPPSIAEAIALVGRLPTQTVRSEEQIDWQQFSTPLDLAAVACLLA
APQDDDIVLEPSAGNGLLIACLPPVAALHLNEIDPARRARLAAAYPLASVTGHDGAQIAS
VMTAAPRPGLILMNPPFSRSLGRGADALAAVRHLQAAIKRLAPGGRVVAIMPDWFAQSAR
MASVWSTTLASVSLRTSIRLTHAYGKHGTGVAVRLYVIDKAVGDTTTTTIQRRDVADLLD
VLAIPPRLPMTAVAPTPVKRSGPISLMRSVKSKPAATPRIFRAPARNDVLPVSYAVLETA
APLAEQTGVYLPYRPSRIVFDTAGEHPTALVESIAMGSIPAPIPSHVPALPERTVTDRLL
SSSQLETVVYAGHAWTQFIPGLSKPDKEGVGLVLADDGRAYRKGYFLGDGTGAGKGRQVA
AVILDNWLAGRRKNIWISKNEALHADAIRDWTALGGLAADVQPLSRWKIDEPISMAEGVL
FVTYPTLRSNRGDATRLDQIIAWAGADFDGVIAFDEAHEMGGVAGGEGSMGTKKGSQQGI
AGVLLQNHLPLARVLYASATGASEVNNLAYAVRLGLWGPDTAFANREAFITQIRQGGIAA
MELVAVRRGGAIERSDDMSSG