Protein Info for GFF4367 in Xanthobacter sp. DMC5

Annotation: C4-dicarboxylate TRAP transporter large permease protein DctM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 176 to 203 (28 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details amino acids 252 to 274 (23 residues), see Phobius details amino acids 286 to 307 (22 residues), see Phobius details amino acids 327 to 354 (28 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details amino acids 406 to 430 (25 residues), see Phobius details PF06808: DctM" amino acids 14 to 426 (413 residues), 281.1 bits, see alignment E=7.7e-88 TIGR00786: TRAP transporter, DctM subunit" amino acids 24 to 431 (408 residues), 355.4 bits, see alignment E=1.8e-110

Best Hits

KEGG orthology group: None (inferred from 86% identity to azc:AZC_0170)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>GFF4367 C4-dicarboxylate TRAP transporter large permease protein DctM (Xanthobacter sp. DMC5)
MPHLDLIQLSLVLLVFLIAILASGVWIALGLGLVGLLAMVLTTPVPIGQVLATTVWSASA
SWTLAALPLFIWMGEILFRTRLSEEMFRGLAPWLQWLPGRLLHVNVIGCGIFAAVSGSSA
ATCATIGKIALPELDKRGYDKGMSLGSLAGSGTLGLLIPPSIPMVVYAVTANVSVLQVFL
AGFLPGLLVMGLYSGYIMLWSLLNPGRTPPRDPHMPFAEKLRQSAKLVPCLLLIAAVFLS
LVLGIATATECAAWGVTGALALAWWSGTLTWKTLIESVMSATRLSCMIMLIIAGAAFTTA
AMAYTGIPVALAEWVQGLNLTPGKLALALTVMYIILGCLVDGISMIVLTAVIVLPMVKQA
GFDLVWFGVYLVIHVEMAQITPPVGFNLFVLQNMSGRDTFSVAKAAFPFFILLNIAVIII
TTFPEIALVLPRWVFPGG