Protein Info for GFF4352 in Xanthobacter sp. DMC5

Annotation: Multidrug resistance protein MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 341 to 359 (19 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details amino acids 391 to 407 (17 residues), see Phobius details amino acids 433 to 456 (24 residues), see Phobius details amino acids 464 to 492 (29 residues), see Phobius details amino acids 523 to 547 (25 residues), see Phobius details amino acids 856 to 877 (22 residues), see Phobius details amino acids 885 to 905 (21 residues), see Phobius details amino acids 911 to 934 (24 residues), see Phobius details amino acids 961 to 980 (20 residues), see Phobius details amino acids 986 to 1010 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1008 (1000 residues), 522.3 bits, see alignment E=1.2e-160

Best Hits

KEGG orthology group: None (inferred from 90% identity to xau:Xaut_0828)

Predicted SEED Role

"AcrB/AcrD/AcrF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1029 amino acids)

>GFF4352 Multidrug resistance protein MdtC (Xanthobacter sp. DMC5)
VSGGFNLSAWALKHRSVIIYLMAISVVAGVMAFRNLGRAEDPTFVIKTMVVQANWPGATL
EETFRQVTERLERKLQETPQLNFLESYTKPGVTTVFVHLKGSATAAEVPDIWYHVRKSIA
DIRHTLPQGIVGPFFNDEFGDTFGIIYGFTADGFSHRELRDYVEEARSELLHVPDVSKIE
ILGAQDERIFIEFSMQELASLGIDRQAVLSALAAQNIVRPSGEIQTGKENISIRVSGAFA
SEADIANVNLAVNGRLIRLADIATIRRGFADPPQPMFRVNGKDAIGLAIAMRDGGDILAM
GANIDRAMTRILANMPVGIDATLVADQAVTVKSAISEFMESLWQAVGIILVVSFIALGVR
AGAIVALAIPLTLAIVFALMQLAHIDMQRISLGALIIALALMVDDAMTTTDATLTRLAAG
DDPPTAASYAFKAYAAAMLAGTLVTVAGFVPVGFAASSAGEYTFTLFAVVAIALLVSWIV
AVLFAPLLQVLILRAPAKDKIPDPNAPPKGVMGMYRAFLILCLRLRWVTLAVTAGLFVLS
VLALPLIPRQFFPSSDRPELLVDLASPQNASIYASQSVAEAFDKVLANDPDVARWSTYVG
RGAIRFYLPLDVQLPNDFFAQSVIVAKDVAARERLRVKLEKVLATDFPQLVARISPLELG
PPVGWPVQYRVSGPEIEKVRAIAFDLAKVMAENPQVETVNYNWIEPARQVSIRVDQDEAR
LLGLSTAQLAGVLNTVLSGQPVTQVRDDIYLVNVVARATDEERVSLSSLATLQVPLPGGR
TVPLSQIATFEYGQDYPAIWRRDRVPTLTVQSDVKRGVLPESVVEKLDPKIEALRRTLPA
GYAITTGGTVEESASSLASVVAVVPVMLLLMFTVLMFELKSFQRLVIVLSVAPLGLIGVV
GALLLSGRPLGFVAILGVLALIGMITKNAVILIGQIEADRAAGKTVWDAVVSGSSMRFRP
IMLTAVSTVLGMIPIAPTVFWGPMAFAIMGGLLVGTLLTLIFLPALYVAWFGPDTGPERV
AGAGKTQPA