Protein Info for PS417_22200 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1404 transmembrane" amino acids 684 to 702 (19 residues), see Phobius details amino acids 800 to 819 (20 residues), see Phobius details PF20178: ToxA_N" amino acids 463 to 739 (277 residues), 108.5 bits, see alignment E=2.4e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UE76 at UniProt or InterPro

Protein Sequence (1404 amino acids)

>PS417_22200 hypothetical protein (Pseudomonas simiae WCS417)
MPSDSLFSAPSSFKDAPQQVALRDQLMALDRQIAEQFQSPPTFHSFVQHEFEQAFPTLTP
SLDVRHAFIRLPATTIPPATSAAQPSTETELLPSLFEAVVQRIVADQPASYAQRMATLHR
LPATGDALLPLSGITPAGLDKFLDRLAAGLGAYYSAFVKTFWTRARSLTDARTQKQWLVH
TRIELLKAEVALLAADRLLSPADQDLFALVLRHPHAQARQALRGDRPCVYEVALKGATGA
ADLTLRGAFVLTARDPEQAVVRPQEEVTPARVRPVDPSMNVGTVLLFLPDSGLEAFDSLA
SLDQELHRRLNHPVEFAAVLDGLAVADQAQGLALHRQLKTTGQVVYHEQLGSPFEASVEA
QCRLMLDNFTSTLSHYPSPVGPIEMAELPQVLDRVTDPGRLFSAGGVLWGRDIKRGQAQI
RTFLHDASLADKDAWRVAMTDYRDLLSSLPDAEGLPSLAQFSDKPALLAYANEQLRIRLK
ADYALDIDPDTVRVHTKEPFVPATVVVPGAPAPAPREPGTPLFRHRSRTLSELALENVGG
LDFNFTHFSRLSENTRKQPDEALLPEDLTPAPAYDGLTLQQVKDLVRAVNVGQSYDTFLK
DRLITSPGALALKQTYAQVMRLQLRLDAIEAKINGDFLPDRLNRGFNWVQAVLDAPVDSD
RRTRVEGHRILVQHLKLRGQRVRGVLLFVSASAGVGSIVVYTPQAPDGRVFHEYAKDRLM
TDFVMNSSWRAYLLGRVERAFESQVRAVLRGRGDVSMVSTGRIADDLFEEAYEVEANFVI
NDAAAQSRSTQHVNVETGLSVATLAFDVLSMVLPVRIMLPIGLARSLFSVFNAVEALDLG
DRAGAAQYFVRSLGELVGALVDGAVGAGAPVAGARPRVLPAEMALWKKPDGVLPLAGWEG
KGVYHSASNAAGAEHYFLNDGGRWYSILDDGDKAVWRLRDARKLTQYHYAPIRQSAAGQW
EIGAHAVGGLKGGNSPERALRDLYPRLDDVQARRVFEAFNFPAGREIEYRLALVENLRLR
LSTAAFEPYLNVPLLRFQWRLDGIDLPDVPAVITQRPAPVEPPLTPPRTPAPEAPVVRPA
NERFIEWGRILDEAELEVVDATRGIYRRIAGDPQWLGQEYIKMDRRYFVILPRDTATPND
VFIRDPAQPATYFTDLENLLRSGIYNQPRQAKFATGDGLWVIASDVALKKPLTMYVREAF
ALLTTRSQVELAQALFNRANPRGLTQQGQHSLIRTLRDWQFWRTMTYAGLADPFSLLPPT
RALSDGSWQLPNAPGHYRRLDFRPEPVVVPLFNALPPGAGGRLRTLMSEVVTRCRYGVLS
GYDFPGELLFRRPGDVRLYWLRLRRVVGDRIAADAQAGPYKSLMDEPTRRLVTQAEVSHN
LVPLMGGIQLTTPAASPQIFIIRV