Protein Info for PS417_22175 in Pseudomonas simiae WCS417

Annotation: amino acid transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 61 (23 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 180 to 197 (18 residues), see Phobius details PF01810: LysE" amino acids 15 to 198 (184 residues), 144.4 bits, see alignment E=1.5e-46

Best Hits

Swiss-Prot: 47% identical to YGGA_AERSA: Putative amino-acid transporter YggA (yggA) from Aeromonas salmonicida

KEGG orthology group: K06895, L-lysine exporter family protein LysE/ArgO (inferred from 97% identity to pfs:PFLU4854)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UQS8 at UniProt or InterPro

Protein Sequence (199 amino acids)

>PS417_22175 amino acid transporter LysE (Pseudomonas simiae WCS417)
MWQSYLNGLLVALGLIMAIGTQNAFVLAQSLRREHHLPVAALCVVCDALLVAAGVFGLAT
VLAQSPVLLAVARWGGAAFLIWYGACALRRACSKQSLDQGDTLKVRSLRAVLLSALAVTL
LNPHVYLDTVLLIGSLGAQQTEPGAYVAGAASASFLWFTTLALGAAWLAPWLARPATWRL
LDLLVAVMMFSVAYQLISA