Protein Info for GFF4323 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF17990: LodA_N" amino acids 36 to 325 (290 residues), 153.2 bits, see alignment E=1e-48 PF18417: LodA_C" amino acids 441 to 587 (147 residues), 117.8 bits, see alignment E=3.6e-38

Best Hits

Predicted SEED Role

"Lysine-epsilon oxidase (EC 1.4.3.20) antimicrobial protein LodA" (EC 1.4.3.20)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.4.3.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (703 amino acids)

>GFF4323 hypothetical protein (Xanthobacter sp. DMC5)
MDRRDLLKGAAGSTLLAATSGLAAADDAPAPVLRIHPAIGIARVGNSPDYYLAPETAAGE
LPASGAGLWGGLPLDAATGQPITADGFRDGQGRLKRQAARFRIYAYTRTGWPTGESTEVT
LGAVIGGKRVADIVWQAHLANKKLNCFSMEDTPGHFPALAGFADGRLMPIRRPQDGPLDS
PERLRRLVIDPGPRALSARADQGRISIFDRATPASCLGDGATPVRALPDYPVSFPGDHFT
LHVPADPLTRLGDMRVEVGTGRLILAGGFGATVGISTPKGPPNVNERSGAENTSWFDDIG
DGPVSARIIFEDGSALMAAPAWVMCGDPGFAPQTRNVVTAWDEVYDTFVRQLALEPALYA
GGTFSPRFAASFADDARPLFHAVMLQRWNTNLPAPAIAAHNRIGAITPADRPTDKIPDFD
GLIRNPDNPKSLAAGTPMMPLALGDTDRPFLTLTPTQYYLLRQWHKGVFTPERRLKLGDG
EEMDRVALANCLGGRFSPGIEVSYPVRDPNLFIQDWANTPGGPFRINAAPLDYSKARADR
AFLTVGYIPLRNIPLEPGDFSKFMAAPWHTDYNHCASHPPESPSNTDQTLYWSWPAERPV
VVHPQGLARFDPATGWVPGRQLFAVRGAGTTTLYPANAGRFQKAADFLVNWQKVGFVVQA
SRINPDARPAAPEDPFLEVACFFENDTSQMVAPWPTFNSPPAP