Protein Info for GFF4283 in Xanthobacter sp. DMC5
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2490 amino acids)
>GFF4283 hypothetical protein (Xanthobacter sp. DMC5) MVNTGGTILSGANVRSSAKGASVTRGRARALLLSSALATVLAGVIQPGTANAACSNSGFP NVTVDCTGTDNNGHSVNNLTGSVTVNAGAGVIVQTAPSGTALNVGALTSITSNNTAATFT GDANGIVYNAGTSITLNNFSGSATGTTGNGIQLFATTGNITANNFTGSATGGDNGISATA AIGNITMTGFGGSATGTEASSNGINLTATLGNITFSSTPAAFVSGGTNGLNFNSLGTINA TTNGGFFSGTTGSGASLNAREVDLTANNSFFTGGTNGVAALGTNLDLNFVGGTAIGASGD GINATAVGFSLGGTQIPAVADVSTSGTFVQGGTNGINATATSVGLTGVGVDATTTVTANG GSVTGGTGAGIFASAITAPVTGGPNTATTTVQGSADVTGGSNGIFALAGSLNGNANTTVN VSGDVEGTSGNGVFALGASVGSFSGFDPNDPSTWNSAVGTGKATVDVTTKDNVTAGNGTG ILAVGIGTGNDVKVNAKDNVDATGGFGVIAGSIGTGGTVDVKTKDVSGTQGGVLGFNTDG NVNVHTTGTVEVASGGFIGVGAIAGGNGNATVNFSGVIDPPLIGAGSATFGNGTATTNTA GTIDADLIGVVALNVGNGRAVVDNNASVESSSGANPLLGVAGIKIGNNNAGPGADVDVQN NGVVTDYAVGVLGLAVGNGNDVSVNNKGVVDAGFLGVGGIVVGEGTGVETVKVRNSGAIE TGGIGVLGAALDLNGTGAGTNVDVNNSGTITGGFLGVAGIAVGEGSGTTVKVVNSGAISD NSGIGVLAGAFGDNHTVTLNNQGAITADLGGVIGVVGGDNGKLDVTNSGAISTQGAAVAG LVVGDEGQVKVTNTGAITGGVLGVGGIVIGDNTTGIATTVEVKNSAAVTNDGIGVLGGGI GDNQVVKVSTSGAIDSGLLGVGGFSIGANGNVDVKTTAAVTSGGAGVVGAGIGDNSVVKV TTGEQVDGTFLGVGGLIGGAGSQLTIVTEDKVTSSDGFGVAALGLGTGQTINVTTQQEVS GDLLGVGALNLGGGGTTVNVETQAKVTSASGFGVLGGSIGTGANTVTVLTQKQVSGDLLG VGGIIGGTGGSLTIETKDTVDSANGFGVAALGLGSNTIDVTTDKAVTGRYLGVGALALGD QNTVTVNTKDTVTSSDGFGVLGGAIGAGPNVVSVTTDKAVAGDLLGVGGVIGGTGGSLTI ETKDTVDSANGFGVAALGFGSNTIDVTTDKAVTGRYLGVGALALGDTNAVTVHTKDTVKS ADGFGVFGGAIGGGANTVKVTTDQTVDGRLLGVGGILGATGGSLDINTKAAVTSADGFGV AGLAFGNNNTVKVLTEGTVSGDLLGVGALSIGDGGTVDVHTLAAVTSANGIGVLGGNIGA GQQVTVVTDGTVNAAIAGVVGFNTGGDTDVTVNQKVSVAPGGFIGAAAISGGTGNATLTI NGVIDPPVVGGGAVTLGSGTATVNVNAEVQATAIGIVGANIGNGAIDVNVNAGGTIKSDG IGILTFKLGDGPTNIDVDAAVGGLSQAATGGDGIFALAFGESPVTINTTANGTINAGDDG ISVGHIGGGNITITTNAAITAGDEGIQVLSAALTTGDVTVTNNAAITATDNGIFILKGGD GAVVVNANANITSTTANGIEANALLGTGDVTVTQAGLTTITAQDFGVIASKTFGTGNVSV TTGTASVINATAGGIFAGRFGGTGDVVVTTGLLSNITTSGNGINAQSIGTTGNVTVTTGT TSGITAGGDGIVANKFAGSGDIFLTTGTSSAVAAGDDGLTATNFAFGPGNDVFVTTGLNS TVLANDKGIRAGGWDNVTVTTSSGSIIRGDADQTGVGNAIRIFSADLATVNIGTNNAVIG SGKSWGEAVISVNSDDGTVINVGAGTLVSSWSYLGGNNLPGLIVAASDIVIDTDGGATTI TNNGTIVGRIGLTNNDDTFNNLSSNTWITVGNNYFGGGTDTLNNTGRIVTALQGAVAENT NFFSLETFNNGDPLFVQSGLLTMIDETPGQIAGNGTRDVTYVSGKWNGVGNSTVGLDSYL GAAGSTSDHLAVGGLDVNGNEIAGLVTTGTTGLLIHDVNTGPGAFNLAGIKVVDVQSAAG TTDPSSFYISPGSTNYSSKFGGVIDKGLFFYDLTVIGNDQYLIGLPDQEVFELPKLVTGA QAIWHETTGVWLDRQADLRTYLQGTPTQLVTKEGVKTIDGAPASVTPGIWGKVVGSWGSR DASNTFAAGGNVYGFDTGYNQSIYGFMAGADFGKESVFATNDAVVFGVLGGYVGSNLNFS NSPTSADYSGGTVGAYATYITGNWYFDALIKADFLSMDYNAPTLAGIGYFGKSTDARNVG FALDTGYRLFTWGNGGFFDGLATLSYVNTNISNLVIAGNTFVDFGNNDSLRGSLGARVGG QIYDAATYKVQASVTGRLWYEFLGDNAVTIFNPGVPFGTADNFDGLFGEVGVGFNVFAKD SGWNSFVNADVKFGDSYTAGSAKGGVRYQW