Protein Info for PS417_02180 in Pseudomonas simiae WCS417

Annotation: proline:sodium symporter PutP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 68 to 70 (3 residues), see Phobius details amino acids 76 to 93 (18 residues), see Phobius details amino acids 124 to 151 (28 residues), see Phobius details amino acids 163 to 184 (22 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 325 to 349 (25 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 402 to 422 (21 residues), see Phobius details amino acids 429 to 446 (18 residues), see Phobius details amino acids 452 to 470 (19 residues), see Phobius details TIGR02121: sodium/proline symporter" amino acids 7 to 488 (482 residues), 740.2 bits, see alignment E=1.1e-226 TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 35 to 437 (403 residues), 393.1 bits, see alignment E=1.6e-121 PF00474: SSF" amino acids 35 to 437 (403 residues), 457.5 bits, see alignment E=2.1e-141

Best Hits

Swiss-Prot: 76% identical to PUTP_SALTY: Sodium/proline symporter (putP) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K11928, sodium/proline symporter (inferred from 98% identity to pfs:PFLU0452)

MetaCyc: 75% identical to proline:Na+ symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-118; TRANS-RXN0-505

Predicted SEED Role

"Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter" (TC 2.A.21.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5Y0 at UniProt or InterPro

Protein Sequence (494 amino acids)

>PS417_02180 proline:sodium symporter PutP (Pseudomonas simiae WCS417)
MSVSNPTLITFVIYIAAMVLIGFMAYRSTNNLSDYILGGRSLGSVVTALSAGASDMSGWL
LMGLPGAIYMSGLSESWIAIGLIVGAYLNWLFVAGRLRVQTEHNGDALTLPDYFSSRFED
KSGLLRIISAVVILVFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATIAYTFVGGF
LAVSWTDTVQATLMIFALILTPIIVLLATGGVDTTFLAIEAKDPTNFDMLKNTTFIGIIS
LMGWGLGYFGQPHILARFMAADSVKSIAKARRISMTWMILCLGGTVAVGFFGIAYFSAHP
EVAGPVNENHERVFIELAKLLFNPWIAGVLLSAILAAVMSTLSCQLLVCSSALTEDFYKT
FLRKNASQVELVWVGRLMVLLVALIAIAMAANPENRVLGLVSYAWAGFGAAFGPVVLISV
IWKGMTRNGALAGILVGAITVIVWKHFELLGLYEIIPGFIFASLAIYFVSKLGAPTAGMV
ERFDAAEKDYNLNK