Protein Info for PS417_21895 in Pseudomonas simiae WCS417

Annotation: nuclease PIN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 106 to 132 (27 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 176 to 184 (9 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details amino acids 479 to 499 (21 residues), see Phobius details amino acids 512 to 534 (23 residues), see Phobius details PF01384: PHO4" amino acids 82 to 527 (446 residues), 300.8 bits, see alignment E=6.1e-94

Best Hits

KEGG orthology group: K03306, inorganic phosphate transporter, PiT family (inferred from 97% identity to pfs:PFLU4794)

Predicted SEED Role

"Low-affinity inorganic phosphate transporter" in subsystem Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UE18 at UniProt or InterPro

Protein Sequence (538 amino acids)

>PS417_21895 nuclease PIN (Pseudomonas simiae WCS417)
MATPSLTASTHASPADPKPRLDKKPGLVTVIVFFAVLAMGLLFTAYSLMHDMHEMGAQLT
TWTPFLLLGVALLIALGFEFVNGFHDTANAVATVIYTNSLPPHFAVVWSGFFNFLGVLLS
SGAVAFGIIALLPVELILQVGSSAGFAMIFALLIAAILWNLGTWWLGLPASSSHTLIGSI
IGVGVANALMHGRDGTSGVDWSQAIKIGYALLLSPLIGFAFAAMLLLALRAFVKNRALYK
APKGNTPPPWWIRGMLIATCTGVSFAHGSNDGQKGMGLIMLILVGTLPMAYALNRTMPAE
QSLQFAAVAEVTQVALLKSAPQALTGDPRPILSTYMRTKEATPELIPALAALAGQIGDEV
KGYGSLAKVPAEAVGNVRNDMYLTSETIRLMDKGKVGNFDADTQGKLQLFKQQIDSSTRF
IPLWVKIAVAIALGLGTMVGWKRIVVTVGEKIGKTHLTYAQGASAEMVAMLTIGAADMYG
LPVSTTHVLSSGVAGTMVANGGGLQMRTIRNLLMAWVLTLPAAILLSGSLYWLFTQLF