Protein Info for GFF4272 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: SbmA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 85 to 112 (28 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 240 to 263 (24 residues), see Phobius details amino acids 311 to 327 (17 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 366 to 383 (18 residues), see Phobius details PF05992: SbmA_BacA" amino acids 80 to 393 (314 residues), 554.3 bits, see alignment E=9.6e-171 PF06472: ABC_membrane_2" amino acids 96 to 283 (188 residues), 37.8 bits, see alignment E=1.5e-13

Best Hits

Swiss-Prot: 92% identical to SBMA_ECOLI: Peptide antibiotic transporter SbmA (sbmA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to ses:SARI_02550)

MetaCyc: 92% identical to peptide antibiotic/peptide nucleic acid transporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-205A

Predicted SEED Role

"SbmA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>GFF4272 SbmA protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MFKSFFPKPGPFFMSAFVWALIAVIFWQAGGGDWVARLVGASDEVPISAARFWSLDYLIF
YAYYLICVGLFATFWFIYSPHRWQYWSILGTSLIIFVTWFLVEVGVAVNAWYAPFYDLIQ
TALSSPHKVTLGQFYHEVGVFLGIALIAVVIGVLNNFFVSHYVFRWRTAMNEHYMAHWQY
LRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIAFLPVLVTLSAHVPNLPIVGHIP
YGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDASRATPPTVRE
LFSAVRHNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFG
QVRGSFQYLINSWTTLVELMSIYKRLRSFERQLDGQPVQEVTHSFS