Protein Info for GFF4269 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative flagellin structural protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 931 TIGR01414: outer membrane autotransporter barrel domain" amino acids 530 to 931 (402 residues), 283.7 bits, see alignment E=1.5e-88 PF03797: Autotransporter" amino acids 673 to 909 (237 residues), 155.6 bits, see alignment E=1.1e-49

Best Hits

Swiss-Prot: 100% identical to YAIT_SALTY: Uncharacterized protein YaiT (yaiT) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 85% identity to ebr:ECB_00321)

Predicted SEED Role

"Putative flagellin structural protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (931 amino acids)

>GFF4269 Putative flagellin structural protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MDAAGTVDGNYVNYSGFVYYNNANGDFDQTFNGDTVNGTISTYYLNHDYNDATSNELNIS
NSVIHGSITSMLPIGYYDRFDTLDHDGYSEYYRFNNGTDTVDGNWYDGDVFTLNIANSTI
DDDYEAFYFTDSYKDGDVTKYTNETFDVSEGVAVNLDVESNINISNNSRVAGIALSQGNT
YNNTYTTESHNWDNNINVFDSTVTSGSDYILDSAYTTDTGTFGTGHFGNSDEPSDYTGAG
DVALSFTDDNGASDYAMKNNVYFSNSTLMGDVKFTSNWNANFDADGDDTNGDGVPDTNHG
WADDGLNVDELNLTLDNGSKWVGQATYTVDTTSRMYDVETNSLTPGATLEDNAWNRIVGN
EVFQSGVFNVTLNNGSEWDTVGDSTVDTLAVNNGSQVNVSNSDLTSDTIDLTNGSSLNIG
EGGYVDTDHLTIDSYSTVGLTESTGWSTYSNLYANTITVTNGGVLDVNVGQFDTEVFSTD
KLELTSGNTADHNGNVVSGVFNIHSSDYVLNADLVNDRTWDTTQANYGYGTIAMNSDGHL
TINGNGDINNGDELDNSSVDNVVAATGNYKVRIDNATGAGSVADYKGNELIYVNDVNTDA
TFSAANKADLGAYTYQAKQEGNTVVLEQMELTDYANMALSIPSANTNIWNLEQDTVGTRL
TNARHGLADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKVDGNNAKWIVGAAAG
FAKGDLSDRTGQVDQDSQSAYIYSSARFANNIFVDGNLSYSHFNNDLSANMSDGTYVDGN
TSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYEL
GVDAGYTFTYSEDQALTPYFKLAYVYDDSNNDADVNGDSIDNGVEGSAVRVGLGTQFSFT
KNFSAYTDANYLGGGDVDQDWSANVGVKYTW