Protein Info for GFF4262 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF10686: YAcAr" amino acids 202 to 266 (65 residues), 73.9 bits, see alignment E=3.7e-25

Best Hits

KEGG orthology group: None (inferred from 65% identity to swi:Swit_5229)

Predicted SEED Role

"FIG01095752: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>GFF4262 hypothetical protein (Sphingobium sp. HT1-2)
MTKYSNFDDMGRAFNERRVDTETRQTYEGSFIEASEMAKLSIVGEAEKLEMPDPDQAAAA
VEQMLSTMFDVFRDTRMEEFAADLAWGFVNSFHMVAKRIEGREDDAAKKLGDLVRSYDPS
EIYAVELEETQLLCQTLEGCAEAMRCMRDHAGEVYRIETGRPFSTVRGSRVSSKLTASMI
DGADYLAARAAKKREEHNPTGPVVAFSGGMEWHDHEQLFERLDQIKRRIPSMVLMTTAMN
KGADAIAAAWASSRDVKLVRMMLERRHGNKAGFLRNDRIASLRPVEAVVCEGSGVQIDFA
RKMRTAGVPLHVFRRNEQAPMQPARSRRA