Protein Info for GFF4260 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1340 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details PF13018: ESPR" amino acids 1 to 45 (45 residues), 53.7 bits, see alignment (E = 5.7e-18) TIGR02601: autotransporter-associated beta strand repeat" amino acids 493 to 524 (32 residues), 33.4 bits, see alignment (E = 2.9e-12) amino acids 722 to 753 (32 residues), 32.9 bits, see alignment (E = 4.2e-12) amino acids 813 to 843 (31 residues), 46.4 bits, see alignment (E = 2.5e-16) PF12951: PATR" amino acids 494 to 522 (29 residues), 23.8 bits, see alignment (E = 9.4e-09) amino acids 723 to 752 (30 residues), 36.2 bits, see alignment (E = 1.3e-12) amino acids 813 to 841 (29 residues), 42.6 bits, see alignment (E = 1.2e-14) PF18883: AC_1" amino acids 874 to 985 (112 residues), 85.6 bits, see alignment E=6e-28 PF03212: Pertactin" amino acids 877 to 1000 (124 residues), 29.7 bits, see alignment E=1.4e-10 TIGR01414: outer membrane autotransporter barrel domain" amino acids 886 to 1340 (455 residues), 208.7 bits, see alignment E=1.7e-65 PF03797: Autotransporter" amino acids 1068 to 1314 (247 residues), 121.5 bits, see alignment E=1.4e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1340 amino acids)

>GFF4260 hypothetical protein (Variovorax sp. SCN45)
MNKTYRNLWNPALGAWVAVSEHTRSRGKRAGTVVLAAALAMPFAALANGGDGGGGMAAGG
GVGAASGNAGGNAPVNGFGGGGGGAGGAGGAGARVGGGGSLGGLAGSAPGADGFDGAAAL
EEFSGGGGGGGGSHGYAGSTLSSGNLTGGRGGAGGAAYAGPISGGGGGGGEGGFGAAITN
GGDTAVAAGQLITGGGGGNGGATSSEIGPNFASGAGGDGGAGMSYSGHLLDNAGTLKGGD
GGNGGNASGAGPFAPLPPAIGGAGGAGLRQSDGTLLNSGNIIGGNGGASGLFVTTPIGGT
PALPAPAEGGVGVVGSNLNIVNIGVISGGYASGHQGDPNYRAAAIVFTGGTNRLELRRDA
SFGGVVDASRGTNTLALGGTDDRRFDVSLIGNAGQFRGFASFEKTGTANWILDNTTTAVT
PWTLRQGTLTISSDASLGDVSGKLTLDGGTLQTSQSIATSRAIAIGANGGAVEVDLARVL
TLNGTISGGSTGTLVKSGQGRMELNAASTYGGGTSVVGGELHVGITGALGTGPVSVGAGT
ALVFNGASDAAALKITAGPSDPGLFNAGSVQFNDNTSAGSAQITLNGGTVGFKDNATAGQ
ALIDNYGGSVSFAGQATIGQATIVNHAGGETTLFGDIDAGRAKFVNQSGGVLDIWDQPVL
GQATFVNQKGGLVVLRNVTANSVSIGSLEGGGNVLIGAKSLVVGGLGTSTEVSGVISGTG
GSLVKVGTGALTLSGANTYTGGTMLRQGRLNVGSSQALGTGTLSMDDDTTLGFSADGLTI
ANTIHLTGQLDPIIDTGAFSGTLSGAISGGGFITKEGTGTLTLSGANTYTGATNVAQGTL
RAGAANTFSAASAHSVAAGATLDLAGFNQTLASLANSGTVSLAGAAAGTTLTVNGNYVGN
NGVLKLGTALNGTGPSDRLVINGGTASGKTSVQIANLGGLGALTTGNGIEVVTAQNGAKT
TAQTTKDAFSLAGGHVDAGAYEYRLYAADASGAGESWYLRSSTNAGVTPANPAGVPVATY
RAEASLYATLPNQLRQGSLAMLGDLRKRVGDDDVKGTAPSATGAERRAWARVLSTDIDIQ
QGGAVSPTSKGRLTGFQAGTDLLATPNWRAGIYVGQLDGDARVNGFASGIQNLGVGRNDL
RSQYVGVYGTYTSDSGFYADAVVQSGRHRYTIEPLMSIGAAGKGNSLLGSIEVGQAFPIG
SSGWTVEPQLQLIHQHMDLSNSAIVGAIAQPQADSGWVARAGVRVKGQIDTGMGALQPYG
RFNVYKTSSGADIARFVNGATTTDIAAPTGGTSTELAGGFTLGLNASTSLYGEVGKLWSS
GGDAKVKSGISGSLGVRVKW