Protein Info for PS417_21800 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 135 to 155 (21 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 207 to 226 (20 residues), see Phobius details amino acids 242 to 261 (20 residues), see Phobius details amino acids 272 to 290 (19 residues), see Phobius details amino acids 296 to 320 (25 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 362 to 381 (20 residues), see Phobius details PF07690: MFS_1" amino acids 11 to 345 (335 residues), 140.4 bits, see alignment E=7.1e-45 PF12832: MFS_1_like" amino acids 25 to 355 (331 residues), 36.5 bits, see alignment E=3e-13

Best Hits

KEGG orthology group: None (inferred from 75% identity to pba:PSEBR_a2200)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2Y2 at UniProt or InterPro

Protein Sequence (389 amino acids)

>PS417_21800 MFS transporter (Pseudomonas simiae WCS417)
MATYSLVIRRLMICSLTIVISRAMTSPLMTLLLSRRLGLNQQDIGLLMGIAVFTATLMGL
YGGYVIDRMEKRKLLILAMLSSSIGFLLLTFATNLYLTTLTLVITESASALFLIGSKAII
SENLPVEQRAKVFSLRYTLTNIGYATGPMVGVVIAGQMPLLPFMLSSAIAFISVFLMIGI
PPTQREESSKPLSFLTTLKTLRNDRSLVLFTGGSLLSTIVHGRYTLYLSQFLLVIHNPDD
ALKILSAVLACNAITVMVLQYQIGRFLKREQLRYWILLGTALFIGGLIGFSQADSLLSWC
VAMFVFTLGEMIIFPSEFLFIDTLAPESLRGSYYGAQNLAAFGGALSPVICGYLLINSPP
TTMFYALAGLTAAGGALCFLSGRRVAGSC