Protein Info for PS417_21785 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 73 to 100 (28 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details amino acids 155 to 168 (14 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 71 to 179 (109 residues), 65.5 bits, see alignment E=2.6e-22 PF00528: BPD_transp_1" amino acids 90 to 285 (196 residues), 78.9 bits, see alignment E=2.1e-26

Best Hits

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 89% identity to pfo:Pfl01_2853)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7W1 at UniProt or InterPro

Protein Sequence (292 amino acids)

>PS417_21785 ABC transporter permease (Pseudomonas simiae WCS417)
MNQTPAERLEAERKLSENQFDITQYEHVPRRYYGRMFFATLIVIVLAALLRAFANGQIEW
SYIGQFLTSEAILWGLVNTIIMSVLAMALGVVIGVITAIMRMSANPILRYVAITYTWLFR
GTPLILQLLLWFNLALIFPVIAIPGLFSIDTVDLMTPFVAALLGLSINQGAYTAEVVRAG
LLSVDTGQYEAAKSIGMPSLQALRRVILPQAMRVIIPPVGNEFISMVKMTSLASVIQYSE
LLHNAQNIYYANARVMELLIVAGIWYLAVVTVLSFGQSRLERRFARGAGKRS