Protein Info for GFF4234 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1039 PF00534: Glycos_transf_1" amino acids 186 to 330 (145 residues), 87.5 bits, see alignment E=1.6e-28 PF13692: Glyco_trans_1_4" amino acids 188 to 321 (134 residues), 75.6 bits, see alignment E=1e-24 amino acids 600 to 728 (129 residues), 52.7 bits, see alignment E=1.1e-17 PF00535: Glycos_transf_2" amino acids 776 to 903 (128 residues), 62.6 bits, see alignment E=9.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1039 amino acids)

>GFF4234 hypothetical protein (Sphingobium sp. HT1-2)
MAAIELPEHKDDGRFAGQRVGILCAGSPVAGNGGAERFYAGLKLGFEQIGCIPEFVELEA
DEPSVDKIIRNYALAGDVDLSRYDFVVSSKVPTYAVKHPNHVMFLNHAVRIFDDMFNVRF
PDAQPSDYSDRARIHKADFAALQGVKARMSQGFEISRRLMRWRGMSAQVLHPPLGFNDFV
PGQGEGDYFMIAGRLHPWKRFDLLIKAVRFAKRPVRLLIAGEGEFEPELRRLAQGMDGIE
FLGRISDEELIRLYSGAIAVPFVPQREDYGYVTLEAFASGSPVLTCTDSGEPAHIVRNFE
TGLVVPPEPQAIAEALDWFWDNRKEARAMGLRGLELVNEMSWRDTAYALASAATDGLSPS
HQDTRRITVLDMQPIDPPTGGGRLRLLGLYHNLGADTRCQYVGTYDWPGEKYRAHALSPT
LSEIDIPLSDAHHRAAAELAQKANGKNVIDLAFSNQAHLSPEYVAEARRAAADAEVVIFS
HPWIYPLVKDVLRPSQIVIYESHNVEGFLRAQLLEDSNQAERQVLEWVVADELELGNRAD
WILACSHEDLLRFNRLYDFPLEKMRVVPNGVMAFSNPVPQEKDRAKARKAMGLAEDAFVG
IFIGSGYGPNVDAARFINEQLAPLCPQVTFVIAGGVGVGMTAGHPNVIITGQLADAERDL
WYVAASFAVNPMMAGSGTNIKMFDFMAMALPVVTTEVGARGIETGGAEMMLVVRPTAVAF
ADAIADLADVERRTTLGQRGRSSVEEGYSWERISDLLGRFVTMREALAAQTLPKISVVIP
SYERPHQLEALMQALQAQVERDFEVVVVDQSAVRWDGADDDWGFPLFYYHSPVKGAVRAR
NNGAMLAQGEIIAFVDDDCLPDPEWLFNARKYFDDADVVGVEGLIRSDHEDDPDWRPVTN
VGFEGIGFMTANLMVRSSAFQYLGGFDLQFDKPHFREDTDFGWRMQDLGKVPYARDVAVF
HPAQPRSLERESLAARTKFFCKDALLWRKHPERYRNLFLAEGHFLNTKGFKEALLDGFRS
MGMPVSEVPAWMMEKLDAH