Protein Info for GFF4232 in Xanthobacter sp. DMC5

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 76 to 92 (17 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 197 to 227 (31 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 109 to 277 (169 residues), 106 bits, see alignment E=1e-34

Best Hits

Swiss-Prot: 63% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 84% identity to azc:AZC_3161)

MetaCyc: 63% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>GFF4232 Putative aliphatic sulfonates transport permease protein SsuC (Xanthobacter sp. DMC5)
MSPPAQSEAAVLPAAAASVAGEPADVRRLAGARAAAVGRALLPWALPLGVLALWQAAASL
GFLSSRVLPAPSDVAVAFWRTLGDGSLLANVAVSTRRALIGLAIGGSIGFALGVLNGIVR
PAETAFDSTMQMLRNVPHLAIIPLVILWFGIGEEAKIFLVAIGVAFPIYLNTFHGIRTVD
RGLVEMARVYGLSSTALFWRIVLPGALPSVLVGLRYALGIMWLTLIVAETISSTEGIGYM
TMNAREFLQTDVVVLGVLAYALLGKLADSFTRAIERRALAWHPAYQHGSEGAA