Protein Info for PS417_21555 in Pseudomonas simiae WCS417

Annotation: flagellar hook protein FlgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 418 (418 residues), 302.2 bits, see alignment E=3.7e-94 PF00460: Flg_bb_rod" amino acids 4 to 33 (30 residues), 32.9 bits, see alignment (E = 1e-11) PF22692: LlgE_F_G_D1" amino acids 83 to 121 (39 residues), 37.8 bits, see alignment 3.4e-13 PF07559: FlgE_D2" amino acids 163 to 317 (155 residues), 87.1 bits, see alignment E=3.4e-28 PF06429: Flg_bbr_C" amino acids 392 to 435 (44 residues), 48.9 bits, see alignment 7.3e-17

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 86% identity to pfs:PFLU4728)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0I6 at UniProt or InterPro

Protein Sequence (436 amino acids)

>PS417_21555 flagellar hook protein FlgE (Pseudomonas simiae WCS417)
MSFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFADIYAASKLGTGQNSIGNGVN
LAAVSQQFTQGDVNGSGGILDMAIQGGGFFVQKGSDGSLEYTRSGAFRADKDGYITNNTG
TSRLQGYAADADGKIIKGGLTDLQLNLSNLPPKASTKVDSTSNLNSSEPVIDQTAKPFNP
NDTSTFTTQYSTTLYDSQGNAHPMVQYLVKTDGNKWNAYTLIDGRNPNGSAPTGTPSTPP
VPSALTFDGNGKLTSVVTGGVSDKTLTITGWVPGTVTDGVWKANGANANPTGIAVNMANI
TQYNSATYRNPPVTDGYATGQITGLKIDGNGVLFATFSNQQSKAIGQISLASFNNEQGLQ
PAGGTSWRETFASGQPGYDTPQAGTLGSIVANSLENSNVNLTNELVDLIKAQSNYQANAK
TISTQSTIMQTIIQMT