Protein Info for GFF4206 in Variovorax sp. SCN45

Annotation: gamma-BHC dehydrochlorinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 PF13577: SnoaL_4" amino acids 12 to 134 (123 residues), 74.5 bits, see alignment E=4e-25

Best Hits

KEGG orthology group: None (inferred from 86% identity to vap:Vapar_5494)

Predicted SEED Role

"gamma-BHC dehydrochlorinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (181 amino acids)

>GFF4206 gamma-BHC dehydrochlorinase (Variovorax sp. SCN45)
MSGAQAMPAALQSLLDREAIRDCLLRYCRGIDRCDEEALRSAYWEDATDCHGAWNGSAAG
FIAQALPRLRQGGRRVHQITNVLIELHGDVAAVESAFLALQSTAVQPARETFLCGRYADR
FERRGGEWRVAARTVIYDWIEERTRPELVQDDAALFGVRQPVGSQAPRDAVYELLRNVRG
G