Protein Info for GFF4184 in Variovorax sp. SCN45
Annotation: Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4422 amino acids)
>GFF4184 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system (Variovorax sp. SCN45) MSTRGRSVRDRQTTRTEDRVFRLAPAARAIALTLAAGGVIGHAQAQRAFSPGWFADKGAA QNMAVQTGRLPNGMPASSLVGPQAQQQQASAQLRRSLENLNLVAQSIAAQQASQAAARLA AQGDPSVPDGLAEGGLKIDTDSLTAGWHNANAPVQSRQADGRTNVAIQQTNDKAILNWET FNVGRNTTVEFKQQADWAVLNRVNDPSARPSRIQGQIKADGTVLVANRNGILFTGTSQVD TRNLVAAAAAITDDQFRNRGIYAGDTTPSFSDALGKVEVSAGAQIATRAPVSATQGGGHV FLLGSEVRNAGRIDTPSGQTVLAAGDSFMIRKGVGTDANPGSTTAGSEVAASRRAGSASS TVVNTGLIMAPTGDITLTGHSVTQAGVVIATTSTARRGTIHLSTRASDEGGTVALAQGGT TAIVLDAGGGTALDSQRDAALQRMGNAPGNNAAGAFDNLGIIADRRDLSRIEIVSGSTVE FQDASTTLATGGEIAVSAPRRTLVASGARLDVSGAVGVKVAMEGNNVLVNTQGNEQRDAP VNRDTGNLNNLNLWVDRRRLVLVPAGTGGYATDRWYTQGGLLEVSGYLATSGHTVGEWMA QGGTITVAGGDLVTRSGSSINLSGGTLDVATGIIRQSWLKGSDGQLHEVSRAPADLMYTG LYRGFEDAHARWGKNTTGYYYNPLIGPQSRLENGYTVGRDAGKLVVATTSAVLEGSIAGD TYQGPQQTAAARTELDGYNQPQNSAPRNGQLVVGQYLPIYDAEARLLRHGLTPLIDRVAL GELTQGAADGLQLSDPMAAERQGTLVLDARGLSASNLAAVRIAARKDIAVRDVLQVADGG EIVLLAPAVDLSANLVAHSGAIRVGNVLRQPQAGTGNPVADVRIDVPQGTEGGVRVHEGV VLDASGRIGDLRLQGSDPGSLAHIDGGIVSLRSTESVMLAGGSRIDVSSGAMVRADGSIV AGKGGSVQLGSGLASAGGGNPAAILTLDGNIRGHGVNGGGTLDIESASGIVIGGKAVARD GVLAAGETSLVDLILKEDYQVKAGDVLPVDYTADSFHAAAGTRLPGSSLSPSVWYTLADD WVLPIPSAVYANSVVADDGRSWTAYSSTQPGSIVVPKGTTVRILDRGRDYFAGYVVEKNV FPDGMELRTPIKVTTPAGQRAPADFTLAAGTSLEAGRLLTRSVRVGGTTSLSTDLFAAGF SDYRIRGQLGVAVPGGVSLDVTMPVLRADATASAFEPWLPALYQENAAKATASQRRGASL SLAGGIADAQAKPGDGGSLVIGEGAQLRVDPGQSISLSSRGSMTVQGTLEAKGGAISLLG PQTLADANKPNETSVLGDGHANARAIVIGEHAVLDVSAARFVATDVLARPYGMLTDGGSI VVGGTLREPLGQVSASDAFVVVREGALLDASGSSASLYLPGVGNRTLASDGGSIQLASAS GVYLDGTARARAGGAGVSGGRLVMALEAPSYAAGADDAVLAVRDLLLTQHRVVAPAARTA PRYGYAALAADQVRDGGFSSLGLYSNGMLSFGDHVDLSLERELRVYAGGIGIGQGVDPAI SAKLAAPYVLLSGLTPATVPEGSVRPSFRGGVTTLASNAVLTMQGRQVDIKGDVSLGLNA RAVGTSIYAPEQRAGFGQLNLISEGDLRFLAGPVTAGTASATTLNSTGSILLRAGQVYPA TGVIATIRAGRMPDADTYDPEQRLVVERFDPRAAAPALPHSVFGRLGLFSAHVEQGGIVR APLGEIRLGDAGPAIVQTQSLHLTPGSITSTSAAGLVMPYGGTSDGVNYLAADQLVTPVT AGLIGGIVMAGKNTDVAQGAVLDLSGGGDLRGAGFVSGRGGSSDARTTPLMQVGKDGFTL PGLGTNPVYAIVPGYASGYAPAGAGGALAPRTGQQITIGANDVPGLAAGTYTLLPSSYAL LPGAFRVELNGSAATQQSDRAIAMRNGSFVVSGTLGVADTGMSDRMPRQVILTSADVLRH YSQYNETSYADFVKQRALLNGTVRGMLPADAKTLTLQAATSAGSSFRFNGSADFAPAGDG YGGTAEIWAIGSNGKNLMEILADGAQPTAGFQGASLHARDLNSLGAARLVIGGNMAAGRD TQSSLIDIESRAGSVTLRQGAMLRAPEVFLAAASNVDGITVELGAGINTIGTGRVAFDST AGYVYRPGAIAVVAVSNGLVDMLAPAAVAGGGIGGGTIRVGTCTGPCDGAPARLYGEGTL AVATRGDFQMGDDARYGARNLVLAMGAVNAGSSEALSAARTRGALTPGLTLNQQVLDRLL NGDTSSGAPALERMALTAAESVNFFGGVSLNTIDPATGHSSLASLVLSTPALYGYGNAQD VASIVTGKLTWVGIGDPLVAPVAFGRGTGAGQLRIKADVIEFGHGPRAQPDNIGDPGRTI LGFADVRMDAVDRITANHQGSLAVYQSQVAGADGPAYQGGNLTLSAPLVTGQGGSINRIT AGGALQVLAPAGTGPTAAPKDLQTGAELDLSGASVRIDTTVALPSGRLVVKADGDVVLGD NSRLDLAGRELAMLDISRYSWGGDVLLQSTRGNIVQAAGSAIDVSARNNDAGSLSVVALD AGAGRIDLGGRLLGSATGHHDAGGTLLPYRAGGLLLRAQDLGDGGLSEEFAALNRRLNEG GFFGERNFQFKRGDLNIGDELRARSLAVSLDNGRLTVSGRVDASGEQVGSIRLSAANGLT IAGGATLDAHGTVLRVDSRGQIIDSPNRAAVVLDSGTGTLTIGDGARIDLRHGTASGGGD GAARGTLELHVARIGHTGSVLDADAATHGDMAIDARGRIDVQGARSIAVYGRQVYTDAPL GSDPAASGRPYQVVDQAYLDAKHAESAAFVDNALANGQLLGVKLAGLNNAAYREAFHLRP EVQITSATPDGDIVVRGDLDLSGQRYASLNPNTPRTGIYGSGEVGLLTLRAGGDLSIHGS INDGFAPPPETPDDHGWLLIPGVQAYGVDLVVPVGGVTLAEGTVYPKGKALNYDISAKDV TLPAGTLLPAAVTLDRGLTLPAGTVLGADVRAADGTVLLAAGTLVGAGGLSLPAGARLLA GVRLPVELPVARLIWPKGAALPVAMTQAGSLVLPVGALIASGTDVKLSDGKTYVDLRPVD AAGRQGRNWAVAQMLPEGSQSWSMRLVAGADLDAADVRLHNASGTGRLSLADTHFGAQVL PGQVILGLNSGGVDAIVEAAGGLPAGISSKRQMVGMLEAEVLRLYQASWPDFGLPMDFWT PEAGNLLMGLTRQGVDAVVAMAGGLPAGVSRPEQMIGMTEADLTRLYQADWGDFGMPSNF WALSQGNGSVINSPASARVRSQGFSVVRTGTGDLSLAAGGDFTMQSAYGVYTAGTATSLG SAALDARYNQPRGAINGGTVLGSVAGAQASDYERLVSGPGSLYKAWYPDRGGHLTVDVGG NLTGDSWSASGEIQRGSSNIGNWLWRQGTGDTAGVNGVPTAWWTNFGTYAYGEAIDGNGQ ALYWPAVVGFTGLGTLGGGDARISVGGDAGIVDMRTTGALVRNSASSTTARSQGLVLAVG SSGRVLDDGSIRLTGGGDLDLRIGGGWNGHAESRLAAVGATVAQSHELFGAIANLRGAID VAAGRIGTMELFYASGQDAKDTRASNPYLASISRATGGLLLMPGDAGTSLSSRADMVLGG TGNPGLVPLPNGTPFASASGGGQNGVSWFSLWTGRTALQLMTAGGQLAFDTRASEAIVDR NFASWDYASNGGWYLLPGSVRATAATGSIFYGSSLANLILPSPTSSSAAGLLLAPQGERR IELVAAQSLYGGGYPISVSGADAWGMATPERPGFAGFSAKGEIVLGNAGAKAPQVDVGRL PLLVFGANTLSGNLAETGAALAPSRFYAASGDIVGLRTGTTAVHQGGLRMGETDYVAAGP VAVKAGRDIVGFGSLLGDPAVTTPEFSSDGGSSALLSGNLIVNTHGNDVSVIQAGRDILH ANVDVAGPGVLEVSAGRNIIQNDRAMLRSIGPAVAADARAGAGIVVQAGMGSRLPPDYGD FLRRYLDPANQAAAGAPLAEQPGKVAKTYGTELVVWLKARFGFDGSPGEAEKFFFALAPE QQRIFARQILFAELRAGGREYNAVDGPRIGSYLRGRNAIATMFPAGEGGEPGDLLMYGGS GIHTDIGGDIQVLTPRGAQTYGIEGSAPPSTAGLITRGKGDVQLFSLGSILLGQSRVMTT FGGDILAWSAQGDINAGRGSKTTVVYTPPRQVYDNVGNMKISPDVPSTGAGIATLNPLPE VPPGDVDLIAPLGTIDAGEAGIRVSGNVNVAALHVVNADNIQVQGKSTGLPVTAVVNVGA LANASAAASSAAAAAQDVLQRDRAAARQNLPSVFTVRVLGFGNESEETDRSPASLRSGLQ PPRGVPYDPANPVQILGVGQDFDAKQLARLTAEQRSQLRQSR