Protein Info for GFF4177 in Sphingobium sp. HT1-2

Annotation: Spacial regulator of FtsZ polymerization, MipZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 PF10609: ParA" amino acids 7 to 60 (54 residues), 33.2 bits, see alignment E=9.5e-12 PF09140: MipZ" amino acids 7 to 254 (248 residues), 362.9 bits, see alignment E=2.3e-112 PF07015: VirC1" amino acids 7 to 132 (126 residues), 30.6 bits, see alignment E=5.6e-11 PF13614: AAA_31" amino acids 7 to 53 (47 residues), 35.6 bits, see alignment 2.4e-12 PF01656: CbiA" amino acids 9 to 130 (122 residues), 39.7 bits, see alignment E=1.2e-13

Best Hits

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 90% identity to sjp:SJA_C1-35260)

Predicted SEED Role

"ATPases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>GFF4177 Spacial regulator of FtsZ polymerization, MipZ (Sphingobium sp. HT1-2)
MANAQTHLIVFANEKGGTGKSTTAVHTAIALTALGHSVGLIDLDPRQRTVTRYMENRAET
ARRRGIDLSAPDFAVFQGDNVAALDEQAAAVAEGKDFLIVDTPGRDDDFARHMAARANTL
VTPMNDSFVDFDLIGQVDAETFRVRRLSFYSELIFEARKSRAKADGVSIDWVVLRNRVQH
HDARNKKRVGDALMELSRRVGFRVIPGLSERVIFRELFPSGLTLLDKGHLGDLGISHIAA
RQELREMVAGLALPTGDHAASVDMLGAA