Protein Info for GFF4168 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transcriptional regulator, TetR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 96 to 114 (19 residues), see Phobius details PF00440: TetR_N" amino acids 19 to 64 (46 residues), 54.2 bits, see alignment 9.9e-19 PF14246: TetR_C_7" amino acids 88 to 207 (120 residues), 96.1 bits, see alignment E=1.4e-31

Best Hits

KEGG orthology group: None (inferred from 93% identity to bxe:Bxe_A1138)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>GFF4168 Transcriptional regulator, TetR family (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTAPPPSSGELNAKALTVLRAARNVFLTHGFSAATTDMIQREAGVSKSTVYAHYANKEAL
FTAVIEAECAAFTNTVQGIEFRPGKLRETLTLLARAYLNIVLSPGGLAVFRVVIAEGPRF
PQLARTFYLAGPQVMTAMVAEQLANAAASGEVDLGEIGRETAASLFINLVRGEPQLQCLT
HPDAAPSSAQIDQWANAAVMTFMRAYGCGEDSPNKRSRS