Protein Info for GFF4167 in Variovorax sp. SCN45

Annotation: ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00005: ABC_tran" amino acids 27 to 185 (159 residues), 107.1 bits, see alignment E=4e-34 amino acids 301 to 451 (151 residues), 115.9 bits, see alignment E=7.9e-37 PF08352: oligo_HPY" amino acids 236 to 274 (39 residues), 15.7 bits, see alignment 5.4e-06 amino acids 503 to 531 (29 residues), 26.9 bits, see alignment (E = 1.7e-09)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 67% identity to vap:Vapar_5948)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>GFF4167 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) (Variovorax sp. SCN45)
MQKNDTSSLLQVSGLTLALADGKALVHGISFDIAPGEMIGIVGESGSGKTLAARSLIGLA
PPAVHRTAGSIVFDGQEVTALSAGALRKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLA
LHTTLSPAQRRARILEMLERVRIQDPAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLIA
DEPTTALDAVVQREVMDLMVELTRDHGTAVLMISHDLPMVARYTDRMVVMHHGRIVESNR
TAALVSAPREDYTRKLLAAMPTRGPVREIPQAAPILEVDGLVLDFPAGGGLLSKRPPKRA
LKGIDLRIAPGEVVALVGGSGSGKTTLGRAIAGLLQPSGGRILFEGKGIARRSEGWARYR
AQCQMVFQDPASSLDPRMTVGASIGEALTGMPGLTPAARRGRILEVLQEVSLPAEVASRY
PHELSGGQRQRVAIARAVVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFI
SHDLAVVEQIADRVIVMRHGEIVEQGPRDEVFDRPHHDYTRELLAAAPRMGGLVHDAMTP