Protein Info for PS417_02115 in Pseudomonas simiae WCS417

Annotation: acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 transmembrane" amino acids 19 to 43 (25 residues), see Phobius details amino acids 63 to 84 (22 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details PF01553: Acyltransferase" amino acids 84 to 201 (118 residues), 58.5 bits, see alignment E=3.3e-20

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU0437)

Predicted SEED Role

"FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UEW1 at UniProt or InterPro

Protein Sequence (270 amino acids)

>PS417_02115 acyltransferase (Pseudomonas simiae WCS417)
MELATQALNDKPRDAYYWRLFATAASFALFGFGGLCLRLLVFPLLSCLPGDAAKHRSRAR
HTISWLFWFFIRLMQRAGVLTYSVEGTEKLGRPGQMIIANHPSLIDVVFLIGLVRQANCV
VKQSLWQNPFTRGPVRDAGYISNDGSAEMLDAAADALRGGQTLIIFPEGTRTTPGAAPAF
HRGGAAIALRGATIITPVVIKVSPTTLTKAEPWYRIPKCRVHFSLRVGADIEPQAFATLG
PPPQASRKLNDYLHHYFIKELAEDERPTPP