Protein Info for GFF4141 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 308 to 325 (18 residues), see Phobius details amino acids 337 to 360 (24 residues), see Phobius details TIGR04408: LPS export ABC transporter permease LptG" amino acids 5 to 361 (357 residues), 289 bits, see alignment E=1.8e-90 PF03739: LptF_LptG" amino acids 9 to 360 (352 residues), 223.1 bits, see alignment E=2.8e-70

Best Hits

KEGG orthology group: K11720, lipopolysaccharide export system permease protein (inferred from 86% identity to xau:Xaut_2837)

Predicted SEED Role

"FIG000906: Predicted Permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>GFF4141 hypothetical protein (Xanthobacter sp. DMC5)
MIGRILGFYFARRFAHAVAVIFLSCVTLIVLVDFLEMARRTADRDQVTVSLLALLTLYRA
PAFTEQLLPFAVLFGGMVTFVILSRRLELVVARAVGLSVWQFITPPVLVAFLVGVFATCV
FNPISADFKERANQIEGDIFASGGGTPGFTQGKKEFWIRQQSVDGQSIIQAQSSRQGGRV
LSGVVIFEFDPAGNFLERVEAKSATLGDGAWILTGAKVLVPGLDLASYDTYLIATKLDPK
QVQDSLIAPETVSFWQLPSAIRSAEQSGFGAEKYRLQLQSLLAKPFLLVAMVLIAAVVGL
RVFRFGGVGQTILGGVLAGFLLYVGTKLAEDLGEAGIVHPVAAAWFPAVTGILLGALILL
HREDG