Protein Info for GFF4122 in Xanthobacter sp. DMC5

Annotation: Cyclic beta-(1,2)-glucan synthase NdvB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2853 transmembrane" amino acids 163 to 179 (17 residues), see Phobius details amino acids 412 to 435 (24 residues), see Phobius details amino acids 441 to 463 (23 residues), see Phobius details amino acids 825 to 841 (17 residues), see Phobius details amino acids 847 to 870 (24 residues), see Phobius details amino acids 891 to 910 (20 residues), see Phobius details amino acids 951 to 970 (20 residues), see Phobius details amino acids 974 to 994 (21 residues), see Phobius details PF10091: Glycoamylase" amino acids 1313 to 1518 (206 residues), 61.4 bits, see alignment 1.4e-20 PF06165: Glyco_transf_36" amino acids 1573 to 1821 (249 residues), 262.1 bits, see alignment E=8.1e-82 amino acids 2078 to 2319 (242 residues), 271.4 bits, see alignment E=1.2e-84 PF17167: Glyco_hydro_36" amino acids 2350 to 2773 (424 residues), 389.1 bits, see alignment E=3.5e-120

Best Hits

Predicted SEED Role

"Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)" (EC 2.4.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.-

Use Curated BLAST to search for 2.4.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2853 amino acids)

>GFF4122 Cyclic beta-(1,2)-glucan synthase NdvB (Xanthobacter sp. DMC5)
LLSHLLSAFGRAPASSPWDQQPIREELFGAERLEEHARSLASAQMVEPRLAKGHALSARL
AENGAILLAAYRAIATSVAEGGAITPSAEWLIDNYHLVEKQIREIRSDLPPGYYRQLPKL
AGGPFAGYPRVFGVAWAFVAHTDSRFDPEMLSRYLTAYQEIQPLTIGELWAVSITLRIVL
IENLRRLAQAIVDDRIARREADALADRLLGAGGTPGEPVETVLGKYEQGQIADAFAVQLV
HRLRDQDPRITPALVWLDKRLAAQHTTADTVVRDVHRSQGAANVTIRNIITSLRLISDLD
WPDLFERTSLVHALLSAGSAYDAMDFPTRNLYRDAIEQLARGSRRSELDIAREAIAATER
ACAAHPDQGPLPRDCEPGYYLIGSGRRAFERHVGFRLPISNVSTHLNRAFGVGGYVAAIA
IAAAALLALPLLALGAAGVGAAQLVILTLLGSVPAIDAAVALVNRAMSFGFGATALPALE
LRDGVPSHLRTLVAVPTLLTSPASIAENVERLEIHHLASPEGDLHFALLSDWTDSETEHA
DGDDALLSEAAAGIDALNARYGPAPGGVRFALLHRRRVWNAGEARWIGWERKRGKLHELN
RLLRGAADTTFVDIAGSPPSLPDDVRYVVTLDADTRLPRDTVRRLIGKMAHPLNRPRFDA
AAGRVVEGYGVLQPRVTPSLPMGEEGSLFQRTFSSMSGIDPYGSAVSDVYQDLSGEGSYV
GKGIYDVDAFEAALNGRVPDSTLLSHDLFEGVFARAGLASDVEVVEEFPARYDVSALRRH
RWARGDWQLLPWILGRGPKLPGAAAGFDTMPVMGRWKMLDNLRRSLSAPLAVAALIAGWT
LPFAAALFWTAAVLVTLALPHFIPVLAAIVPRQRGIAAVSHLRALLADLRLATLQSTLNV
VFLAYEAWLMGDAIVRTLWRLLVTRSHLLEWVPAAQASLARQLDLAGSYRRMAGGLVIAA
VAVAVAAVAGQGGWPLAAVFAVAWAVSPAVAYRISRAPHPAGQLEMSDAQAQTLRLTARR
TWRFFETFVTASDHHLPPDNFQEDPAPVVAHRTSPTNMGLYLLSIASARDFGWLGTGAAL
GRLEASLATMARLPRFRGHFFNWYDTSDLRPLDPKYVSTVDSGNLAGHLIALANALNEWK
TSAQPIAQRLAGIADALDLTREEAGLLADGRRTQTVTLPQLDETLAGLSAGARRAFLEGE
DSAVRLAELAAGADTMMDIALALATERGDAAGADMLFWARASLDIIASHRQDIAYSQTQD
AALASRLSALEDDARAMALEMEFGFLLSRDRNLLSIGYLVAEGTLDPSCYDLLASEARLA
SFFAIAKGDVPAKHWFRLGRSVTPIAHGGALISWSGSMFEYLMPSLIMRAPAGSLLDQTN
RLVVRRQIDYAADLRVPWGISESAYNARNLELTYQYSNFGVPGLGLKRGLGDNLVVAPYA
TALAAMADPIAACANLARLREAGGRGRYGFYEALDYTTSRVPVGARHAVVKAFMAHHQGM
TIVAIADTLMGGIMRARFHAEPLIQATELLLQERTPRDVAVVRPWSADGRSTARARDLDP
PAGRTFTSARQATPATHLLSNGRYCAMLTAAGSGYSRWGDFAVTRWREDPTCDDTGSYVF
IRDVHSGEVWSCGAQPSGVEPAAYHVTFHEDRAEFLRRDGTLETSLDVLVSAEDDAEVRR
VSLSNTGTRWRELEITSYAELVLAPQSSDIAHPAFSKLFVETEYLSDLGVILATRRRRSP
GEPEIWAAHFSVLDGEVVGGPEIETDRARFLGRGHGVRDPIAVIDGRPLSNTTGRVLDPI
FALRRRVRIEPGGMARVAFWTMATSTRSALLDGIDRHRDTAAYSRAATLAWTQAQVELYH
LGITASDAATYQRLAGYAIYAAPTLRPSSDTILRGGGPQSGLWAQSISGDLPIVLLRISD
IEDIDVAHELLKAHAYWRMKQLAVDLVILNDRQSSYVQDLQIAIEALVRTSRSQPQAERN
RPTGRVFVLRADLIPGETRSLLSSIARIVLVAQRGSLVEQLDRISEAEFTASAAPKRRVV
VPEPPPVVPELEFFNGLGGFADNGREYVTVLGPGRSTPAPWINVVANPAFGFHVATEGSG
CTWAENSRENLITPWSNDPVTDRSGEAFYLRDDETGAVWTPTALPMRDEAATYVARHGRG
YSAFTHAAHGIASELIQFVPVEGSIKIARLKVRNLTPRPRRLSLAAYVEWVLGPSRTATS
TFVTTGIDGETGALFARNAWNGDFGARVAFLDMAGRQTDWTGDRSEFIGRNGTLAAPAAM
LRGGRLSGLVGAGLDPCGAMRTTVNLRPNASAEIVILLGQGADTAEARELITRFRAADFD
AVLTEVTQGWDAILGAVEVRTPDRAMDITLNGWLLYQSLACRVWARSAFYQASGAYGFRD
QLQDGMALAPLRPDMTRAHLLRAAGRQFVEGDVQHWWLPHSGRGVRTRISDDRAWLAYAT
AHYVKVSGDRAVLDEAVPFLEGQRLHPGEHEAFFPPNVSDQSASLFEHCARALDESLALG
GHGLPLIGTGDWNDGMNRVGEGGEGESVWLAWFLHAALTAFAPLAEARGEHGYAARWRAH
AEGLQAALERTAWDGDWYRRAFFDDGTPLGSAMSEECRIDSIAQSWAVLSGAGDPARAVR
AMAAVERDLIRPGEGLALLFTPPFDRTPLDPGYIKGYPPGIRENGGQYTHAALWSVMAFA
TLGEGDKAGALFSMLNPINHARTRSDVVRYKVEPYVLAADIYSEPPHAGRGGWTWYTGSA
GWMQRAGIESILGLRKEGDMLRLDPCIPRGWPGFDLTIRHGAARYRITVDNPKGVSRGIA
SATLDGVALSTSPLLIPLRDEPGERAVHVRLGF