Protein Info for GFF412 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Peptide transport system permease protein sapB (TC 3.A.1.5.5)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1461 transmembrane" amino acids 35 to 54 (20 residues), see Phobius details PF13018: ESPR" amino acids 1 to 47 (47 residues), 57.3 bits, see alignment (E = 4e-19) PF05658: YadA_head" amino acids 119 to 144 (26 residues), 20.3 bits, see alignment (E = 1.4e-07) amino acids 146 to 172 (27 residues), 24 bits, see alignment (E = 9.7e-09) amino acids 174 to 200 (27 residues), 22 bits, see alignment (E = 4.1e-08) amino acids 202 to 227 (26 residues), 28.2 bits, see alignment (E = 4.6e-10) amino acids 938 to 955 (18 residues), 11.7 bits, see alignment (E = 6.8e-05) amino acids 943 to 969 (27 residues), 26.1 bits, see alignment (E = 2.1e-09) amino acids 957 to 983 (27 residues), 20.1 bits, see alignment (E = 1.7e-07) amino acids 1104 to 1130 (27 residues), 21.2 bits, see alignment (E = 7.3e-08) amino acids 1237 to 1254 (18 residues), 12.3 bits, see alignment (E = 4.5e-05) amino acids 1256 to 1281 (26 residues), 17.8 bits, see alignment (E = 8.7e-07) PF05662: YadA_stalk" amino acids 232 to 275 (44 residues), 26.9 bits, see alignment (E = 1.3e-09) amino acids 337 to 381 (45 residues), 42 bits, see alignment (E = 2.5e-14) amino acids 456 to 500 (45 residues), 43.1 bits, see alignment (E = 1.2e-14) amino acids 547 to 591 (45 residues), 45.7 bits, see alignment (E = 1.8e-15) amino acids 638 to 681 (44 residues), 46.5 bits, see alignment (E = 9.8e-16) amino acids 709 to 753 (45 residues), 49.8 bits, see alignment (E = 9.6e-17) amino acids 800 to 843 (44 residues), 49.4 bits, see alignment (E = 1.2e-16) amino acids 871 to 911 (41 residues), 45.5 bits, see alignment (E = 2e-15) amino acids 1029 to 1067 (39 residues), 38 bits, see alignment (E = 4.4e-13) amino acids 1165 to 1205 (41 residues), 42.6 bits, see alignment (E = 1.6e-14) amino acids 1286 to 1325 (40 residues), 40.1 bits, see alignment (E = 9.9e-14) amino acids 1339 to 1374 (36 residues), 28.5 bits, see alignment (E = 4.1e-10) PF03895: YadA_anchor" amino acids 1401 to 1461 (61 residues), 64.6 bits, see alignment (E = 1.8e-21)

Best Hits

Swiss-Prot: 100% identical to SADA_SALTY: Autotransporter adhesin SadA (sadA) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

Predicted SEED Role

"Peptide transport system permease protein sapB (TC 3.A.1.5.5)" in subsystem ABC transporter peptide (TC 3.A.1.5.5) (TC 3.A.1.5.5)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1461 amino acids)

>GFF412 Peptide transport system permease protein sapB (TC 3.A.1.5.5) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNRIFKVLWNAATGTFVVTSETAKSRGKKNGRRKLAVSALIGLSSIMVSADALANAGNDT
GDGVTPTGTQTGGKGWIAIGTDATANTYTNVDGASAAMGYKASAMGKWSTAIGSYSQSTG
DSSLALGVKSVSAGDRAIAMGASSSASGSYSMAMGVYANSSGAKSVALGYKSVASGATSS
ALGYQATASGDDSAAFGNGAKAIGTNSVALGSGSVAQEDNSVAVGNSTTQRQITYVAKGD
INSTSTDAVTGAQIYSLSQSVADRLGGGASVNSDGTVNAPLYEVGTGIYNNVGSALSALN
TSITNTEASVAGLAEDALLWDESISAFSASHTGNASKITNLAAGTLAADSTDAVNGSQLF
DTNEKVDKNTADIATNTGSINQNTADITANTDSINQNTTDIAANTTSINQNTTDIATNTT
NINSLSDSVTTLTDDALLWDAASGAFSAKHNGSDSKITNLAAGTLAADSTDAVNGSQLFD
TNEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLTDDALLWDAASGAFSAN
HNGSASKITNLAAGTLAADSTDAVNGSQLFATNENVSQNTADITTNTNSINQNTTDIATN
TTSINNLSDSITTLTDDALLWDAASGTFSASRSGSASKITNLAAGTLAADSTDAVNGSQL
YETNQKVDQNTSAIADINTSITNLSSDNLSWNETTSSFSASHGSSTTNKITNVAAGELSE
ESTDAVNGSQLFETNEKVDQNTTDIAANTTNITQNSTAIENLNTSVSDINTSITGLTDNA
LLWDEDTGAFSANHGGSTSKITNVAAGALSEDSTDAVNGSQLYETNQKVDQNTSAIADIN
TSITNLGTDALSWDDEEGAFSASHGTSGTNKITNVAAGEIASDSTDAVNGSQLYETNMLI
SQYNESISQLAGDTSETYITENGTGVKYIRTNDNGLEGQDAYATGNGATAVGYDAVASGA
GSLALGQNSSSSIEGSIALGSGSTSNRAITTGIRETSATSDGVVIGYNTTDRELLGALSL
GTDGESYRQITNVADGSEAQDAVTVRQLQNAIGAVTTTPTKYYHANSTEEDSLAVGTDSL
AMGAKTIVNADAGIGIGLNTLVMADAINGIAIGSNARANHANSIAMGNGSQTTRGAQTDY
TAYNMDTPQNSVGEFSVGSEDGQRQITNVAAGSADTDAVNVGQLKVTDAQVSRNTQSITN
LNTQVSNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGADANAQGADSVAIGSGSIAAAEN
SVALGTNSVADEANTVSVGSSTQQRRITNVAAGVNNTDAVNVAQLKASEAGSVRYETNAD
GSVNYSVLNLGDGSGGTTRIGNVSAAVNDTDAVNYAQLKRSVEEANTYTDQKMGEMNSKI
KGVENKMSGGIASAMAMAGLPQAYAPGANMTSIAGGTFNGESAVAIGVSMVSESGGWVYK
LQGTSNSQGDYSAAIGAGFQW